Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   DV384_RS08710 Genome accession   NZ_CP031241
Coordinates   1758397..1758909 (+) Length   170 a.a.
NCBI ID   WP_112103684.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M17648     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1753397..1763909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV384_RS08690 nrfF 1753697..1754851 (-) 1155 WP_114934711.1 heme lyase NrfEFG subunit NrfF -
  DV384_RS08695 - 1754848..1755378 (-) 531 WP_005648041.1 DsbE family thiol:disulfide interchange protein -
  DV384_RS08700 nrfE 1755378..1757285 (-) 1908 WP_042611089.1 heme lyase NrfEFG subunit NrfE -
  DV384_RS08705 suhB 1757394..1758197 (-) 804 WP_114890559.1 inositol-1-monophosphatase -
  DV384_RS08710 comN 1758397..1758909 (+) 513 WP_112103684.1 type II secretion system protein Machinery gene
  DV384_RS08715 comO 1758909..1759625 (+) 717 WP_005651546.1 type II secretion system protein J Machinery gene
  DV384_RS08720 comP 1759640..1760323 (+) 684 WP_005648030.1 DUF2572 family protein Machinery gene
  DV384_RS08725 comQ 1760316..1760603 (+) 288 WP_012055313.1 DUF5374 domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19821.00 Da        Isoelectric Point: 8.7271

>NTDB_id=304513 DV384_RS08710 WP_112103684.1 1758397..1758909(+) (comN) [Haemophilus influenzae strain M17648]
MQKGMTLVELLIGLAIISIALNFAAPLWQTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=304513 DV384_RS08710 WP_112103684.1 1758397..1758909(+) (comN) [Haemophilus influenzae strain M17648]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGCGCTGAATTTTGCCGCGCCATT
ATGGCAAACGGATTCACCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGCGACACAGCAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCTCATTTTTACTACCCTTA
TTTTCCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCTGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACTAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

98.235

100

0.982

Multiple sequence alignment