Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   DV384_RS07085 Genome accession   NZ_CP031241
Coordinates   1433104..1433400 (-) Length   98 a.a.
NCBI ID   WP_114934644.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M17648     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1428104..1438400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV384_RS07060 - 1428515..1429072 (-) 558 WP_114934639.1 DNA-3-methyladenine glycosylase I -
  DV384_RS07065 aroE 1429069..1429887 (-) 819 WP_114934640.1 shikimate dehydrogenase -
  DV384_RS07070 - 1429891..1430442 (-) 552 WP_114934641.1 Sua5/YciO/YrdC/YwlC family protein -
  DV384_RS07075 - 1430458..1430994 (-) 537 WP_114934642.1 type I DNA topoisomerase -
  DV384_RS07080 - 1431004..1432920 (-) 1917 WP_114934643.1 ABC transporter ATP-binding protein -
  DV384_RS07085 HI0659 1433104..1433400 (-) 297 WP_114934644.1 helix-turn-helix transcriptional regulator Machinery gene
  DV384_RS07090 - 1433393..1433530 (-) 138 WP_240317778.1 shikimate dehydrogenase -
  DV384_RS07095 - 1433845..1436797 (-) 2953 Protein_1341 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11122.97 Da        Isoelectric Point: 10.3139

>NTDB_id=304509 DV384_RS07085 WP_114934644.1 1433104..1433400(-) (HI0659) [Haemophilus influenzae strain M17648]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LTPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=304509 DV384_RS07085 WP_114934644.1 1433104..1433400(-) (HI0659) [Haemophilus influenzae strain M17648]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGCGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAACAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTGTTAAAATTG
CTCACTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

98.98

100

0.99

Multiple sequence alignment