Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DV384_RS06840 Genome accession   NZ_CP031241
Coordinates   1392856..1393509 (+) Length   217 a.a.
NCBI ID   WP_005694574.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M17648     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1387856..1398509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV384_RS06815 - 1388274..1389278 (-) 1005 WP_005651072.1 ornithine carbamoyltransferase -
  DV384_RS06820 - 1389681..1390499 (+) 819 WP_005692782.1 Cof-type HAD-IIB family hydrolase -
  DV384_RS06825 crcB 1390499..1390885 (+) 387 WP_005654963.1 fluoride efflux transporter CrcB -
  DV384_RS06830 recX 1390882..1391340 (-) 459 WP_038439484.1 recombination regulator RecX -
  DV384_RS06835 recA 1391419..1392483 (-) 1065 WP_050847756.1 recombinase RecA Machinery gene
  DV384_RS06840 sxy/tfoX 1392856..1393509 (+) 654 WP_005694574.1 DNA transformation protein TfoX Regulator

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25001.38 Da        Isoelectric Point: 10.0171

>NTDB_id=304508 DV384_RS06840 WP_005694574.1 1392856..1393509(+) (sxy/tfoX) [Haemophilus influenzae strain M17648]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQILRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=304508 DV384_RS06840 WP_005694574.1 1392856..1393509(+) (sxy/tfoX) [Haemophilus influenzae strain M17648]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGATTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.539

100

0.995

Multiple sequence alignment