Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   DV384_RS05340 Genome accession   NZ_CP031241
Coordinates   1101430..1102125 (-) Length   231 a.a.
NCBI ID   WP_114890122.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M17648     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1096430..1107125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV384_RS05305 - 1098021..1098227 (-) 207 WP_005689491.1 heavy-metal-associated domain-containing protein -
  DV384_RS05310 - 1098313..1098519 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  DV384_RS05315 - 1098605..1098811 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  DV384_RS05320 - 1098885..1099091 (-) 207 WP_015701556.1 heavy-metal-associated domain-containing protein -
  DV384_RS05325 - 1099168..1099545 (+) 378 WP_075913212.1 Cu(I)-responsive transcriptional regulator -
  DV384_RS05330 metJ 1099559..1099876 (-) 318 WP_005631186.1 met regulon transcriptional regulator MetJ -
  DV384_RS05335 rho 1100112..1101374 (+) 1263 WP_114890123.1 transcription termination factor Rho -
  DV384_RS05340 pilD 1101430..1102125 (-) 696 WP_114890122.1 A24 family peptidase Machinery gene
  DV384_RS05345 pilC 1102122..1103339 (-) 1218 WP_114890121.1 type II secretion system F family protein Machinery gene
  DV384_RS05350 pilB 1103336..1104730 (-) 1395 WP_114890120.1 GspE/PulE family protein Machinery gene
  DV384_RS05355 pilA 1104727..1105176 (-) 450 WP_114934572.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  DV384_RS05360 ampD 1105291..1105851 (+) 561 WP_005648974.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26934.96 Da        Isoelectric Point: 9.0938

>NTDB_id=304492 DV384_RS05340 WP_114890122.1 1101430..1102125(-) (pilD) [Haemophilus influenzae strain M17648]
MIYFTMFLLGGGILGIALWFYLSGFITRLQQEIYATYIELFPQNRSPFQPHFASIQQKKCGHILRYFLNVGVGFIFLQIA
FKDSIFTVWFGLTLLILWAISYLDWHYQLISTTLCLWLLTIGLFGADNNFSLLTLSESIKSAASFFIVFYAIYWIAKFYY
GKEAFGRGDYWLAMALGSFIHLETLPHFLLLASVLGICFSLIHKKKKEFIPFAPFMNLSAVIIYFVKYYWY

Nucleotide


Download         Length: 696 bp        

>NTDB_id=304492 DV384_RS05340 WP_114890122.1 1101430..1102125(-) (pilD) [Haemophilus influenzae strain M17648]
ATGATTTACTTCACAATGTTTTTATTAGGCGGCGGCATCTTAGGGATCGCATTGTGGTTCTACCTATCTGGTTTTATTAC
CCGTTTACAGCAAGAGATTTATGCGACTTATATTGAATTATTTCCACAAAACCGTTCTCCATTTCAACCGCACTTTGCCT
CTATTCAACAAAAAAAGTGCGGTCATATTTTGAGGTATTTTTTAAATGTTGGGGTAGGATTTATATTTTTACAAATTGCC
TTCAAAGATTCTATTTTTACTGTATGGTTCGGACTCACACTTCTTATCCTTTGGGCAATCAGTTATCTTGATTGGCACTA
TCAACTTATTTCTACTACACTCTGTTTATGGCTACTTACAATCGGTTTATTTGGGGCAGACAATAATTTTTCATTGCTTA
CATTATCTGAAAGCATAAAAAGTGCGGCAAGTTTTTTTATTGTTTTCTACGCAATCTATTGGATTGCAAAATTCTATTAC
GGAAAAGAAGCCTTTGGACGGGGAGATTATTGGCTAGCAATGGCATTAGGAAGTTTTATTCATTTAGAAACCTTACCGCA
CTTTTTATTATTAGCCTCAGTTCTTGGAATATGTTTTTCGCTTATTCATAAAAAGAAAAAAGAATTTATACCTTTTGCCC
CTTTTATGAACTTATCAGCTGTCATAATTTATTTCGTCAAATATTACTGGTATTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(93-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae Rd KW20

92.641

100

0.926
  pilD Haemophilus influenzae 86-028NP

92.641

100

0.926

Multiple sequence alignment