Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   DV384_RS03920 Genome accession   NZ_CP031241
Coordinates   819366..821732 (-) Length   788 a.a.
NCBI ID   WP_114934528.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M17648     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 814366..826732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV384_RS03905 kdsB 815656..816420 (-) 765 WP_114934526.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DV384_RS03910 lpxK 816491..817489 (-) 999 WP_114934527.1 tetraacyldisaccharide 4'-kinase -
  DV384_RS03915 msbA 817562..819325 (-) 1764 WP_005657750.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  DV384_RS03920 rec2 819366..821732 (-) 2367 WP_114934528.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DV384_RS03925 dksA 821991..822428 (+) 438 WP_011271805.1 RNA polymerase-binding protein DksA -
  DV384_RS03930 pcnB 822676..824034 (+) 1359 WP_012054791.1 polynucleotide adenylyltransferase PcnB -
  DV384_RS03935 folK 824043..824525 (+) 483 WP_005687519.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  DV384_RS03940 tsaE 824601..825077 (+) 477 WP_014326546.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DV384_RS03945 - 825085..826383 (+) 1299 WP_012054793.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89392.91 Da        Isoelectric Point: 9.8979

>NTDB_id=304489 DV384_RS03920 WP_114934528.1 819366..821732(-) (rec2) [Haemophilus influenzae strain M17648]
MKLNLITLAVLLIVADLTLLFLPQPLLLPWQVALVIALVLIFLFIFLRRNFLVSLAFFVSSLGYFHYSALSLSQQAQNIT
AQKQVVTFKIQEILHQQDYQTLIATATLENNLQEQRIFLNWKAKEVPQLSEIWQAEISLRPLSARLNFSGFDRQQWYFSK
GITVVGTVKSAVKIADVSSLRAEKLQQVKKQTEGLSLQGLLIALAFGERAWLDKTTWSIYQQTNTAHLIAISGLHIGLAM
GIGFCLARVVQVFFPTRFIHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALVFVLFIQIMRRHYSPIQLFTLVVGFLLF
CDPLMPLSVSFWLSCGAVGCLILWYRYVPFSLFQWKNRPFSPKVRWIFSLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LMAVPIYSFLLVPLILFAVFTNGTMFSWQLANKLAEGITGLISVFQGNWFNVSFNLALVLTALCAGIFMLIIWSIYREPE
ISSSNWQIKRAKFFTLNLSKPLLKNERINVLLCSFGIILMCFMILLFKQLSKPTWQVDTLDVGQGLATLIVKNGKGILYD
TGSSWRGGSMAELEILPYLQREGIVLEKLILSHDDNDHAGGASTILKAYPNVELITPSRKNYGENYRTFCTAGRDWHWQG
LHFQILSPHNVATRADNPHSCVILVDDGKNSVLLTGDAEAKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDVA
IISSGRWNPWKFPHYSVMERLHRYKSAVENTAVSGQVRVNFFQDRLEIQQARTKFSPWYARVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=304489 DV384_RS03920 WP_114934528.1 819366..821732(-) (rec2) [Haemophilus influenzae strain M17648]
ATGAAATTAAACTTAATAACTTTAGCTGTCTTGTTAATTGTCGCGGATTTAACGTTGTTATTTCTACCGCAACCGTTGCT
ATTGCCTTGGCAAGTTGCTCTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTCTTGCGTAGAAATTTCTTAGTTA
GCCTTGCTTTTTTTGTTTCCTCTCTTGGCTATTTTCATTATTCGGCTTTGAGTTTATCACAACAAGCTCAAAATATTACC
GCTCAAAAGCAAGTGGTAACTTTTAAGATTCAAGAAATTTTGCACCAACAGGATTATCAAACGCTTATCGCTACAGCAAC
ATTGGAGAATAATTTGCAAGAACAACGAATTTTCTTAAATTGGAAAGCGAAAGAGGTGCCTCAATTATCGGAAATTTGGC
AAGCTGAAATTTCTTTACGTCCCCTTTCTGCACGATTAAATTTCAGTGGGTTTGATCGGCAACAATGGTATTTTTCAAAA
GGAATTACTGTTGTTGGAACGGTAAAAAGTGCGGTGAAAATTGCGGATGTTTCATCATTGCGTGCAGAAAAATTGCAACA
AGTGAAAAAACAAACAGAAGGGTTGTCCTTACAAGGTTTATTGATTGCCTTAGCTTTTGGTGAACGGGCTTGGTTAGATA
AAACCACTTGGTCAATTTACCAACAAACCAATACCGCACATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGAATTGGATTTTGCTTGGCGCGTGTTGTGCAAGTGTTCTTTCCTACGCGTTTTATTCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCGTATTTGGCTGGTTTTAGCGTGCCCACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTATTTATTCAAATAATGAGGCGACATTATTCGCCCATTCAGCTTTTTACGTTGGTTGTCGGATTCTTGCTTTTC
TGCGATCCATTAATGCCGCTTTCGGTCAGTTTTTGGCTTTCTTGTGGGGCGGTTGGGTGTTTGATCCTCTGGTATCGTTA
TGTGCCTTTTTCACTTTTTCAATGGAAAAATCGCCCTTTTTCTCCAAAAGTGCGGTGGATTTTTAGTTTATTTCATTTGC
AATTTGGGTTATTGCTCTTTTTTACACCTTTGCAACTTTTTCTATTTAATGGCTTATCGTTGAGTGGATTTTTAGCCAAT
CTTATGGCGGTTCCAATTTATAGTTTTTTGCTTGTGCCATTAATTTTATTTGCCGTTTTTACTAACGGCACCATGTTTTC
TTGGCAACTAGCAAACAAGTTAGCCGAAGGAATTACTGGGTTAATTTCTGTTTTTCAAGGGAATTGGTTTAATGTTTCAT
TTAATTTAGCATTGGTTTTAACCGCACTTTGTGCAGGAATTTTTATGTTAATTATTTGGAGTATTTACCGAGAACCCGAG
ATTTCATCATCAAACTGGCAAATAAAACGAGCAAAATTTTTTACATTGAATCTCAGTAAACCTTTGCTAAAAAATGAACG
AATCAACGTTTTGCTATGTTCTTTCGGCATTATTCTTATGTGTTTTATGATTTTGTTGTTTAAACAATTGAGCAAACCAA
CTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGCTTGGCAACGCTGATTGTGAAAAATGGCAAAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCGAGGTGGAAGTATGGCTGAGTTGGAAATTTTGCCTTATTTACAAAGAGAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGACGATAACGATCACGCAGGTGGTGCTTCGACAATTTTAAAGGCGTATCCCAATGTGGAAT
TGATTACCCCTTCACGGAAAAACTATGGGGAAAATTACCGCACTTTTTGTACTGCTGGGCGTGATTGGCATTGGCAAGGG
TTGCATTTTCAAATACTTTCTCCTCACAACGTTGCGACACGAGCTGATAATCCCCATTCTTGTGTGATTTTAGTCGATGA
TGGAAAGAATAGCGTTTTGCTAACTGGCGATGCTGAAGCAAAAAATGAGCAAATTTTTGCCCGCACTTTAGGCAAAATCG
ATGTGTTGCAAGTGGGGCATCATGGGAGTAAAACATCGACAAGTGAATACTTGCTTTCTCAGGTTAGACCAGATGTAGCG
ATTATTTCTAGTGGGCGTTGGAATCCGTGGAAATTCCCTCATTATTCGGTTATGGAAAGGCTTCATCGCTATAAAAGTGC
GGTAGAAAATACCGCTGTTTCGGGGCAAGTGCGGGTAAATTTTTTTCAAGACCGATTAGAAATCCAGCAAGCTCGCACAA
AATTTTCCCCTTGGTATGCGCGTGTAATTGGATTATCAAAGGAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(28-171)

Competence protein (Competence)

(204-473)

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

97.843

100

0.978

Multiple sequence alignment