Detailed information NTG0304483

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EWS90_RS11920
• Genome accession: NZ_CP035739
• Coordinates: 2474989..2475993 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 1334/14
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2469989..2480993

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EWS90_RS11900 (EWS90_11900)	-	2470472..2471479 (+)	1008	WP_012613731.1	TolB family protein	-
EWS90_RS11910 (EWS90_11910)	mutS	2471605..2474172 (+)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
EWS90_RS11915 (EWS90_11915)	fdxA	2474239..2474562 (+)	324	WP_003092272.1	ferredoxin FdxA	-
EWS90_RS11920 (EWS90_11920)	rpoS	2474989..2475993 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
EWS90_RS11925 (EWS90_11925)	-	2476098..2476991 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
EWS90_RS11930 (EWS90_11930)	-	2477037..2477672 (-)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EWS90_RS11935 (EWS90_11935)	surE	2477705..2478454 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
EWS90_RS11940 (EWS90_11940)	truD	2478442..2479509 (-)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
EWS90_RS11945 (EWS90_11945)	ispF	2479506..2479979 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EWS90_RS11950 (EWS90_11950)	fghA	2480050..2480901 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=304483 EWS90_RS11920 WP_003113871.1 2474989..2475993(-) (rpoS) [Pseudomonas aeruginosa strain 1334/14]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=304483 EWS90_RS11920 WP_003113871.1 2474989..2475993(-) (rpoS) [Pseudomonas aeruginosa strain 1334/14]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653