Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   DV427_RS06160 Genome accession   NZ_CP031240
Coordinates   1220560..1222926 (+) Length   788 a.a.
NCBI ID   WP_114891665.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain M19345     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1215560..1227926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV427_RS06135 - 1215835..1217205 (-) 1371 WP_114891663.1 N-acetylmuramoyl-L-alanine amidase -
  DV427_RS06140 tsaE 1217213..1217689 (-) 477 WP_005635434.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DV427_RS06145 folK 1217765..1218247 (-) 483 WP_114891664.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  DV427_RS06150 pcnB 1218256..1219698 (-) 1443 WP_420920537.1 polynucleotide adenylyltransferase PcnB -
  DV427_RS06155 dksA 1219863..1220300 (-) 438 WP_005627987.1 RNA polymerase-binding protein DksA -
  DV427_RS06160 rec2 1220560..1222926 (+) 2367 WP_114891665.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DV427_RS06165 msbA 1222967..1224730 (+) 1764 WP_114891666.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  DV427_RS06170 lpxK 1224803..1225801 (+) 999 WP_114891667.1 tetraacyldisaccharide 4'-kinase -
  DV427_RS06175 - 1225794..1225979 (+) 186 WP_114891668.1 Trm112 family protein -
  DV427_RS06180 kdsB 1225983..1226747 (+) 765 WP_114891669.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89556.89 Da        Isoelectric Point: 9.5841

>NTDB_id=304482 DV427_RS06160 WP_114891665.1 1220560..1222926(+) (rec2) [Haemophilus haemolyticus strain M19345]
MKLNLITLVILLIVADLTLLFLPQSLLLPWQVAFVIALTLIFLFIFLRRNFLVFLAFFVVSLGCTHHSALSLLQQAQSIT
AQKQVVTFEIQEILHQQDYQTIIATATLADNLREQRIFLNWKAKEVPQLSEIWQAEISLQPLSARLNFGGFDRQQWYFSK
GITAVGTVKSAVKIADFSSLRAEKLQQVKKQTEGLSLQGLLIALAFGERAWLDKTTWSIYQQTNTAHLIAISGLHIGLSM
GVGFYLARVVQVFFPTRFIHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALVFVFFVQIMRRHYSPLQLFTLVVGFLLL
CDPLMPLSVSFWLSCGAVACLILWYRYVPFSLFQWKNRSFFQKVRWILSLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LIAVPLYSFFLVPLILFAVFTNGACFSWQLANKLAEGITWLISVFQGNWFNVSFNLALVLTALCAGIFMLIIWSVYREPE
ISSSTKQIKRARFFTLNLSKPLLKNDRINALRCSFGIMSLCFMILLFKQLSKPIWQVDTLDVGQGLATLIVKNGKGILYD
TGPAWQGGNMAELEILPYLQREGITLEKLILSHDDNDHAGGASTILKAYPNVEFITPSRKNYGENYRTFCTAGRDWDWQG
LHFQILSPHSIVERADNAHSCVILVDDGKHSVLLTGDAEVKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDVA
IISSGRWNPWKFPHYSVMERLHRYKSAVENTAISGQVRVNFFKERLEIQQARTEFSPWYARVIGFSSE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=304482 DV427_RS06160 WP_114891665.1 1220560..1222926(+) (rec2) [Haemophilus haemolyticus strain M19345]
ATGAAATTAAACTTAATAACTTTGGTTATCTTGTTGATTGTTGCGGATTTAACGTTGTTATTTCTACCGCAGTCATTGCT
ATTGCCTTGGCAAGTTGCTTTCGTTATTGCGCTTACTTTGATTTTTCTTTTTATTTTTTTGCGTAGAAATTTCTTAGTTT
TTCTTGCTTTTTTTGTTGTTTCTCTCGGTTGTACACATCATTCAGCACTCAGCTTGTTACAACAAGCACAAAGTATTACC
GCTCAAAAACAAGTGGTGACTTTTGAGATTCAAGAAATTTTGCACCAACAGGATTATCAAACTATTATCGCCACAGCAAC
ATTGGCGGATAACTTACGAGAGCAACGAATTTTTTTAAATTGGAAGGCAAAAGAAGTGCCTCAATTATCGGAAATTTGGC
AAGCGGAAATTTCCTTACAGCCACTTTCTGCGCGATTAAATTTTGGTGGATTTGATCGGCAACAATGGTATTTTTCAAAG
GGGATTACGGCTGTCGGAACCGTAAAAAGTGCGGTAAAAATTGCTGATTTTTCATCATTGCGAGCAGAAAAATTGCAACA
AGTAAAGAAGCAAACGGAAGGGTTATCACTGCAAGGTTTATTAATTGCATTAGCTTTTGGTGAGCGGGCTTGGTTAGATA
AAACTACTTGGTCAATTTACCAACAAACCAATACCGCACATCTTATTGCTATTTCTGGCTTACATATTGGGTTGTCTATG
GGAGTTGGATTTTACTTGGCGCGTGTTGTGCAAGTATTTTTCCCCACCCGTTTTATTCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCGTATTTGGCTGGTTTTAGCGTGCCAACTTTCCGTGCGATTTCAGCACTTGTTT
TCGTTTTCTTCGTTCAAATAATGAGGCGACATTATTCGCCTCTTCAGCTTTTTACGCTGGTTGTCGGATTCTTGCTTTTA
TGCGATCCATTAATGCCGCTTTCGGTCAGTTTTTGGCTTTCTTGTGGAGCCGTTGCTTGTTTGATCCTATGGTATCGTTA
TGTGCCTTTTTCTCTTTTTCAATGGAAAAATCGATCCTTTTTCCAAAAAGTGCGGTGGATTTTAAGTTTATTTCATTTGC
AATTTGGGTTATTGCTCTTTTTTACGCCTTTGCAGCTTTTTTTATTTAATGGCTTATCGTTGAGTGGATTTTTAGCCAAT
CTTATTGCCGTACCACTTTATAGTTTTTTCCTCGTACCCTTGATTTTATTTGCTGTTTTTACTAATGGAGCTTGTTTTTC
TTGGCAACTTGCAAACAAACTAGCGGAAGGAATCACTTGGTTAATTTCTGTTTTTCAAGGAAATTGGTTTAATGTTTCAT
TTAATTTAGCGCTGGTTTTAACCGCACTTTGTGCAGGAATTTTTATGCTAATTATTTGGAGTGTTTACCGAGAACCCGAG
ATTTCATCATCAACCAAACAAATAAAACGAGCAAGATTTTTTACATTAAATCTCAGTAAACCTTTGCTAAAAAATGATCG
AATCAACGCTCTGCGATGTTCTTTTGGCATTATGTCGCTGTGTTTTATGATTTTGTTGTTCAAGCAACTAAGCAAGCCAA
TTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGCTTAGCTACTTTAATTGTAAAAAATGGTAAAGGGATTCTCTATGAT
ACAGGCCCTGCATGGCAAGGGGGAAATATGGCTGAATTAGAAATTTTGCCTTATTTGCAAAGAGAAGGGATTACTTTGGA
AAAGTTGATTTTGAGCCACGATGATAACGATCATGCAGGTGGTGCTTCGACAATTTTAAAGGCGTATCCCAATGTGGAAT
TTATTACCCCTTCACGAAAAAATTATGGGGAAAATTACCGCACTTTTTGTACTGCTGGACGTGATTGGGATTGGCAAGGG
CTACATTTTCAAATACTTTCACCACATTCTATTGTGGAGCGAGCAGATAATGCCCATTCTTGTGTGATTTTAGTTGATGA
TGGAAAGCATAGCGTTTTGCTAACTGGCGATGCTGAAGTAAAAAATGAGCAAATTTTTGCCCGCACTTTAGGAAAAATTG
ATGTGTTACAAGTAGGGCATCACGGGAGTAAAACATCGACAAGTGAATATTTACTTTCTCAGGTGCGACCAGATGTAGCG
ATTATTTCTAGTGGGCGTTGGAACCCGTGGAAATTCCCTCATTATTCGGTTATGGAAAGGCTACATCGTTATAAAAGTGC
GGTAGAGAATACCGCAATTTCAGGGCAAGTAAGGGTAAATTTCTTTAAAGAACGATTAGAAATCCAACAAGCACGCACAG
AATTTTCCCCTTGGTATGCGCGTGTAATTGGATTCTCGAGCGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)

Competence protein (Competence)

(204-473)

Domain of unknown function (DUF4131) (DUF4131)

(29-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

90.736

100

0.907

Multiple sequence alignment