Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LCHO_RS19775 Genome accession   NC_010524
Coordinates   4458353..4458790 (-) Length   145 a.a.
NCBI ID   WP_012348970.1    Uniprot ID   B1Y8F9
Organism   Leptothrix cholodnii SP-6     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4453353..4463790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCHO_RS19760 (Lcho_3968) - 4454974..4457307 (-) 2334 WP_012348967.1 methyl-accepting chemotaxis protein -
  LCHO_RS19765 (Lcho_3969) - 4457362..4457892 (-) 531 WP_012348968.1 chemotaxis protein CheW -
  LCHO_RS19770 (Lcho_3970) - 4457908..4458273 (-) 366 WP_012348969.1 response regulator transcription factor -
  LCHO_RS19775 (Lcho_3971) pilG 4458353..4458790 (-) 438 WP_012348970.1 response regulator Regulator
  LCHO_RS19780 (Lcho_3972) - 4458812..4458964 (-) 153 WP_012348971.1 rubredoxin -
  LCHO_RS19785 (Lcho_3973) thiD 4459178..4460110 (+) 933 WP_012348972.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LCHO_RS19790 (Lcho_3974) hemL 4460031..4461464 (+) 1434 WP_420805689.1 glutamate-1-semialdehyde 2,1-aminomutase -
  LCHO_RS19795 (Lcho_3975) - 4461513..4462388 (+) 876 WP_012348974.1 D-hexose-6-phosphate mutarotase -
  LCHO_RS19800 (Lcho_3976) - 4462390..4463478 (-) 1089 WP_012348975.1 6-phosphofructokinase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16057.56 Da        Isoelectric Point: 6.4583

>NTDB_id=30448 LCHO_RS19775 WP_012348970.1 4458353..4458790(-) (pilG) [Leptothrix cholodnii SP-6]
MSEEAAVVQLPSQPSGAVRDPQVIRVLVIDDSNTIRRSAEIFLKQGGCEVVLAEDGFDALAKVSDHRPDVIFCDILMPRL
DGYQTCAIIKRNPEFAAVPVIMLSSKDGLFDKARGRMVGSQDYLTKPFTKDQLLQAVYLHRRVPA

Nucleotide


Download         Length: 438 bp        

>NTDB_id=30448 LCHO_RS19775 WP_012348970.1 4458353..4458790(-) (pilG) [Leptothrix cholodnii SP-6]
ATGAGCGAGGAAGCAGCTGTCGTGCAACTACCGTCCCAACCCTCCGGGGCCGTGCGTGATCCCCAGGTCATTCGCGTGCT
GGTCATCGACGACAGCAACACCATCCGGCGCAGCGCCGAGATCTTTCTCAAGCAGGGCGGCTGCGAGGTGGTGCTGGCCG
AAGACGGCTTCGATGCGCTGGCCAAGGTCAGCGATCACCGGCCCGACGTGATCTTCTGCGACATCCTGATGCCGCGCCTC
GACGGTTACCAGACCTGCGCGATCATCAAGCGCAACCCCGAGTTCGCCGCGGTGCCGGTGATCATGCTGTCGTCCAAGGA
CGGCCTGTTCGACAAGGCGCGCGGGCGCATGGTCGGCTCGCAGGACTACCTCACCAAGCCCTTCACCAAGGATCAGCTGC
TGCAGGCGGTCTATCTGCATCGCCGGGTGCCGGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(26-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1Y8F9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.185

82.069

0.51

Multiple sequence alignment