Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DV427_RS03410 Genome accession   NZ_CP031240
Coordinates   685321..685974 (-) Length   217 a.a.
NCBI ID   WP_114891301.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain M19345     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 680321..690974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV427_RS03410 sxy/tfoX 685321..685974 (-) 654 WP_114891301.1 DNA transformation protein TfoX Regulator
  DV427_RS03415 recA 686361..687425 (+) 1065 WP_005636084.1 recombinase RecA Machinery gene
  DV427_RS03420 recX 687505..687963 (+) 459 WP_114891302.1 recombination regulator RecX -
  DV427_RS03425 crcB 687960..688346 (-) 387 WP_114891303.1 fluoride efflux transporter CrcB -
  DV427_RS03430 - 688346..689164 (-) 819 WP_114891304.1 Cof-type HAD-IIB family hydrolase -
  DV427_RS03435 - 689584..690588 (+) 1005 WP_114891305.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25289.56 Da        Isoelectric Point: 10.0416

>NTDB_id=304466 DV427_RS03410 WP_114891301.1 685321..685974(-) (sxy/tfoX) [Haemophilus haemolyticus strain M19345]
MNIKDEHINNVCLLLDQLVGNVTFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEDELAIQLSKLGCEPFTTNELNKRFVL
SQYYALSDQVMRNNMLCRKLIILSIQQIRNQRLDRTLRKLNRLKDLPNLTIKHERALIKVGITDVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQFLSQSEKERLLKKLNEILRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=304466 DV427_RS03410 WP_114891301.1 685321..685974(-) (sxy/tfoX) [Haemophilus haemolyticus strain M19345]
ATGAATATAAAAGACGAGCATATAAATAATGTTTGCCTTCTATTAGATCAGTTGGTAGGAAATGTTACCTTTAAAAATCT
TTTTACAGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAGAATAAAAAACTTTATCTACGTGGTG
AGGATGAACTTGCAATTCAATTAAGTAAATTAGGTTGTGAACCATTTACAACAAATGAGTTGAATAAGAGATTTGTACTT
TCTCAATATTATGCACTTTCAGATCAGGTGATGCGTAATAATATGTTGTGTAGAAAGTTGATTATTCTTTCTATTCAGCA
AATTCGCAATCAGAGGTTAGATCGTACTTTAAGAAAGCTAAATAGATTAAAGGATTTACCCAATTTAACTATCAAGCACG
AAAGAGCGCTAATAAAAGTTGGCATTACTGATGTTGCTATGCTAAGAGAAATTGGTGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGCGGCAGCGGAGCAACTTTAGATTTTTATTGGAAGTTAGTATGTGCTTTGCAAAATAAAAATAGCCAATTTTT
AAGTCAATCTGAAAAGGAGCGTTTGTTAAAGAAATTAAACGAAATTTTGAGAAAGAATGGTTTAAAAGGCTATAGAAAAT
TAGATGACGAATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(15-107)

TfoX C-terminal domain (TfoX_C)

(121-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

89.862

100

0.899

Multiple sequence alignment