Detailed information NTG0030444

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: LCHO_RS17455
• Genome accession: NC_010524
• Coordinates: 3915698..3916738 (+)
• Length: 346 a.a.
• NCBI ID: WP_012348505.1
• Uniprot ID: B1Y3Q5
• Organism: Leptothrix cholodnii SP-6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3910698..3921738

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LCHO_RS17425 (Lcho_3498)	-	3911601..3912563 (+)	963	WP_012348499.1	ribose-phosphate pyrophosphokinase	-
LCHO_RS17430 (Lcho_3499)	-	3912631..3913257 (+)	627	WP_012348500.1	50S ribosomal protein L25/general stress protein Ctc	-
LCHO_RS17435 (Lcho_3500)	pth	3913391..3914032 (+)	642	WP_012348501.1	aminoacyl-tRNA hydrolase	-
LCHO_RS17440 (Lcho_3501)	-	3914042..3914314 (-)	273	WP_012348502.1	YfhL family 4Fe-4S dicluster ferredoxin	-
LCHO_RS17445 (Lcho_3502)	coaD	3914364..3914864 (-)	501	WP_012348503.1	pantetheine-phosphate adenylyltransferase	-
LCHO_RS17450 (Lcho_3503)	rsmD	3914880..3915542 (-)	663	WP_012348504.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
LCHO_RS17455 (Lcho_3504)	pilA	3915698..3916738 (+)	1041	WP_012348505.1	signal recognition particle-docking protein FtsY	Machinery gene
LCHO_RS22905 (Lcho_3505)	-	3916740..3919235 (-)	2496	WP_012348506.1	XrtA/PEP-CTERM system-associated ATPase	-
LCHO_RS17465 (Lcho_3506)	-	3919246..3920829 (-)	1584	WP_190274817.1	TIGR03016 family PEP-CTERM system-associated outer membrane protein	-
LCHO_RS17470 (Lcho_3507)	-	3920801..3921718 (-)	918	WP_012348508.1	XrtA-associated tyrosine autokinase	-

Sequence

Protein

• Length: 346 a.a.
• Molecular weight: 36338.68 Da
• Isoelectric Point: 7.2211

>NTDB_id=30444 LCHO_RS17455 WP_012348505.1 3915698..3916738(+) (pilA) [Leptothrix cholodnii SP-6]
MFSFLRRKATPPPPTVAPVTPESPAVEVVSAPPPAAVENRGGWLNRLKQGLRRTGSSIAQVFTGTQIDDALYEDLEAALL
VADAGVGATQFLLNDLKRRVKETRTTDPGAVKALLADALTDLLTPLQGTLKVDAQQPTVIMVAGVNGAGKTTTIGKLTRN
LAEANCKVLLAAADTFRAAAREQLAVWADRNQVEIVSQEGGDPAAVCFDAISAGRARGCDVVIADTAGRLATQLHLMEEL
RKIHRSIGRAMPGAPHEVLLVVDGNTGQNALAQVKAFDTALGLTGLVVTKLDGTAKGGVLAAIALWGRERQARGLGAVPV
YFIGVGESLADLQTFDAREFSQALLN

Nucleotide

• Length: 1041 bp

>NTDB_id=30444 LCHO_RS17455 WP_012348505.1 3915698..3916738(+) (pilA) [Leptothrix cholodnii SP-6]
ATGTTCAGTTTCCTGCGCCGCAAGGCAACCCCGCCGCCGCCGACGGTGGCACCCGTGACCCCGGAATCGCCGGCCGTCGA
GGTCGTCAGCGCACCGCCACCCGCCGCCGTCGAGAACCGCGGCGGCTGGCTGAACCGCCTGAAGCAGGGCCTGCGCCGCA
CCGGCTCGTCGATCGCCCAGGTGTTCACCGGCACGCAGATCGACGATGCGCTCTACGAAGACCTGGAAGCCGCGCTGCTG
GTCGCCGACGCCGGGGTCGGCGCCACGCAGTTTCTGCTCAACGACCTCAAGCGCCGGGTCAAGGAGACCCGCACCACCGA
CCCGGGCGCCGTCAAGGCCCTGCTGGCCGATGCGCTGACCGACCTGCTGACGCCGCTCCAGGGCACGCTGAAGGTCGATG
CCCAGCAGCCCACGGTGATCATGGTGGCGGGTGTCAACGGTGCCGGCAAGACCACCACCATCGGCAAGCTCACGCGCAAC
CTGGCCGAGGCCAACTGCAAGGTGCTGCTGGCCGCCGCCGACACGTTCCGGGCCGCCGCGCGCGAGCAGCTGGCGGTGTG
GGCCGACCGCAATCAGGTCGAGATCGTCAGCCAGGAGGGCGGCGACCCGGCCGCCGTCTGCTTCGACGCCATCTCGGCCG
GCCGCGCGCGCGGCTGCGACGTCGTCATCGCCGACACCGCCGGACGGCTGGCCACCCAGCTGCATCTGATGGAGGAGCTG
CGCAAGATCCACCGCAGCATCGGCCGGGCCATGCCGGGCGCGCCGCACGAAGTGCTGCTGGTGGTCGATGGCAACACCGG
CCAGAACGCGCTAGCACAGGTCAAGGCCTTCGACACGGCCCTCGGCCTGACCGGCCTGGTCGTCACCAAGCTCGACGGCA
CCGCCAAGGGTGGCGTGCTGGCAGCCATCGCGCTGTGGGGGCGTGAACGGCAGGCGCGCGGGCTGGGCGCCGTGCCGGTC
TACTTCATCGGCGTCGGTGAAAGCCTGGCCGACCTTCAGACCTTCGACGCCCGGGAGTTCTCGCAGGCCTTGCTGAACTG
A

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (55-119)

• SRP54-type protein, GTPase domain (SRP54) (137-345)

3D structure

• AlphaFold DB: B1Y3Q5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	54.459	90.751	0.494