Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   DV369_RS01610 Genome accession   NZ_CP031239
Coordinates   312980..313276 (-) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain M13034     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307980..318276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV369_RS01585 - 308391..308948 (-) 558 WP_050949054.1 DNA-3-methyladenine glycosylase I -
  DV369_RS01590 aroE 308945..309763 (-) 819 WP_050949053.1 shikimate dehydrogenase -
  DV369_RS01595 - 309767..310318 (-) 552 WP_050949052.1 Sua5/YciO/YrdC/YwlC family protein -
  DV369_RS01600 - 310334..310870 (-) 537 WP_050949051.1 type I DNA topoisomerase -
  DV369_RS01605 - 310880..312796 (-) 1917 WP_050949050.1 ABC transporter ATP-binding protein -
  DV369_RS01610 HI0659 312980..313276 (-) 297 WP_005650837.1 helix-turn-helix transcriptional regulator Machinery gene
  DV369_RS01615 - 313269..313451 (-) 183 Protein_292 type II toxin-antitoxin system RelE/ParE family toxin -
  DV369_RS01620 - 313597..315897 (-) 2301 WP_230304886.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  DV369_RS09445 - 316105..316509 (-) 405 Protein_294 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  DV369_RS09615 - 316440..316631 (-) 192 WP_345995064.1 PT domain-containing protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=304427 DV369_RS01610 WP_005650837.1 312980..313276(-) (HI0659) [Haemophilus influenzae strain M13034]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=304427 DV369_RS01610 WP_005650837.1 312980..313276(-) (HI0659) [Haemophilus influenzae strain M13034]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGCGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTGTTAAAATTG
CTCGCTCCCTTGGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1

Multiple sequence alignment