Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EPB55_RS09550 Genome accession   NZ_CP035731
Coordinates   1893415..1894938 (-) Length   507 a.a.
NCBI ID   WP_045623569.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 2142-77     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1888415..1899938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB55_RS09530 - 1889699..1890685 (+) 987 WP_011151430.1 serine/threonine protein kinase -
  EPB55_RS09535 - 1890718..1891323 (+) 606 WP_011079070.1 thiol:disulfide interchange protein DsbA/DsbL -
  EPB55_RS09540 - 1891377..1892258 (-) 882 WP_060532905.1 acyltransferase -
  EPB55_RS09545 - 1892401..1893376 (+) 976 Protein_1781 DUF2860 domain-containing protein -
  EPB55_RS09550 comM 1893415..1894938 (-) 1524 WP_045623569.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EPB55_RS09555 ilvG 1895408..1897054 (+) 1647 WP_011151435.1 acetolactate synthase 2 catalytic subunit -
  EPB55_RS09560 ilvM 1897066..1897350 (+) 285 WP_011079065.1 acetolactate synthase 2 small subunit -
  EPB55_RS09565 ilvE 1897362..1898300 (+) 939 WP_011151436.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54695.82 Da        Isoelectric Point: 9.1030

>NTDB_id=304412 EPB55_RS09550 WP_045623569.1 1893415..1894938(-) (comM) [Vibrio vulnificus strain 2142-77]
MGLAIIHSRASVGVEAPSVSVEVHISNGLPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQISVQFLQQHEFVGELALSGELRAVKGVLPAALAAKGVSRSLVVPHANGDQAALVGKNMHKSACSL
IEVCAHLCGQQALSLHQTKQALQPSSHSRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSE
EEAMETAAVASLTQSDINEHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSMREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARANPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAVVKARVAQARERMQHRNGKVNALLGSREIEAFCPLSKQDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAPQ
ITRAHLAEALGYRAMDRLLKQLTLQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=304412 EPB55_RS09550 WP_045623569.1 1893415..1894938(-) (comM) [Vibrio vulnificus strain 2142-77]
ATGGGGTTGGCGATTATTCATAGCCGCGCCAGTGTGGGCGTAGAAGCGCCTTCAGTGAGCGTGGAAGTGCACATCAGTAA
CGGTTTACCGGGATTTACCTTAGTGGGGTTGCCGGAAACCACCGTGAAGGAGTCAAAAGATCGCGTACGCAGTGCGATCG
TCAACAGTAACTTTCAATTTCCTGCCAAGCGGATCACCGTCAACTTGGCACCTGCTGATCTGCCCAAAGAAGGGGGACGT
TTTGACTTGCCGATCGCACTTGGCATTTTGGCCGCTTCTGAGCAGATCTCCGTTCAGTTTCTCCAACAACATGAATTTGT
CGGTGAGTTGGCCTTAAGTGGTGAGCTACGAGCAGTGAAAGGGGTTTTGCCAGCCGCTCTTGCCGCCAAAGGGGTCTCCC
GCAGTTTGGTGGTACCTCATGCGAATGGGGATCAAGCCGCCTTGGTGGGTAAGAACATGCATAAGTCGGCGTGCTCGCTG
ATTGAAGTTTGTGCCCATTTATGTGGCCAGCAAGCCCTGTCATTACATCAAACCAAGCAAGCATTGCAGCCCTCATCACA
CAGCCGAGATTTACAAGACATCATTGGTCAGCAACAAGGAAAGCGCGCGTTGGAGATTGCCGCTGCGGGCAATCACAATT
TATTGTTTTTAGGGCCTCCAGGGACGGGTAAAACCATGCTGGCGTCACGTTTGCGAGATCTGTTGCCTGAAATGAGTGAG
GAAGAGGCGATGGAAACGGCAGCGGTGGCTTCTTTAACACAAAGCGATATCAACGAGCACAATTGGAAGCAGCGACCATT
TCGCGCGCCGCATCACTCGAGTTCTATGGCGGCGCTGGTGGGCGGTGGAACCATTCCGCGTCCCGGAGAAATCTCACTCG
CACACAACGGCTTACTGTTTTTGGATGAGATGCCGGAATTTGAGCGCAAAGTGCTCGATTCAATGCGCGAGCCGCTAGAG
TCGGGGGAAATCATCATTTCACGAGCGCAGGGTAAAACCCGTTTTCCTGCTCGCTTTCAGTTGGTCGGAGCGCTGAATCC
GAGCCCCACGGGCTATTACGAAGGGAACCAAGCTCGCGCCAATCCTCAGGCGATTTTGCGTTATTTAGGCCGTTTATCGG
GTCCACTTTTGGATCGTTTTGATATGTCACTCGAAATCCCCGCATTACCCAAAGGCACATTGGCGGAAGGGGGGGACCGA
GGTGAACCAACGGCGGTGGTGAAGGCGCGAGTGGCGCAGGCGAGAGAGCGAATGCAGCATCGTAATGGCAAGGTGAATGC
CCTATTAGGCAGCCGAGAAATCGAAGCGTTTTGTCCACTAAGTAAGCAGGATGCCGAGTTTCTTGAAACGGCGTTGCACC
GTTTGGGGTTATCGATTCGTGCGTATCACCGCATTATCAAAGTGGCGCGAACCATTGCCGATTTAGAAGGCGCACCTCAG
ATCACGCGTGCGCATTTGGCCGAAGCACTCGGTTATCGGGCGATGGATCGCTTGCTCAAACAGCTCACTCTGCAAGCGGT
TTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

87.968

100

0.88
  comM Vibrio cholerae O1 biovar El Tor strain E7946

84.221

100

0.842
  comM Vibrio cholerae strain A1552

84.221

100

0.842
  comM Haemophilus influenzae Rd KW20

65.089

100

0.651
  comM Glaesserella parasuis strain SC1401

62.846

99.803

0.627
  comM Legionella pneumophila str. Paris

50.202

97.83

0.491
  comM Legionella pneumophila strain ERS1305867

50.202

97.83

0.491
  comM Acinetobacter baylyi ADP1

49.194

97.83

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432

Multiple sequence alignment