Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   DV441_RS06740 Genome accession   NZ_CP031238
Coordinates   1392616..1392903 (-) Length   95 a.a.
NCBI ID   WP_032825578.1    Uniprot ID   A0A0M1GKC6
Organism   Haemophilus haemolyticus strain M28486     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1387616..1397903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV441_RS06730 nrdR 1388682..1389131 (-) 450 WP_005627362.1 transcriptional regulator NrdR -
  DV441_RS06735 recC 1389193..1392567 (-) 3375 WP_046953323.1 exodeoxyribonuclease V subunit gamma -
  DV441_RS06740 comQ 1392616..1392903 (-) 288 WP_032825578.1 DUF5374 domain-containing protein Machinery gene
  DV441_RS06745 comP 1392896..1393579 (-) 684 WP_046953322.1 DUF2572 family protein Machinery gene
  DV441_RS06750 comO 1393594..1394310 (-) 717 WP_032825585.1 PulJ/GspJ family protein Machinery gene
  DV441_RS06755 comN 1394304..1394822 (-) 519 WP_046953321.1 type II secretion system protein Machinery gene
  DV441_RS06760 suhB 1395022..1395825 (+) 804 WP_005633301.1 inositol-1-monophosphatase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10904.69 Da        Isoelectric Point: 10.1669

>NTDB_id=304409 DV441_RS06740 WP_032825578.1 1392616..1392903(-) (comQ) [Haemophilus haemolyticus strain M28486]
MNKGMSLTTLLFSLALFSVLFIAFNQWTASQRKSAVKTYQDFQAIQVAENQAQRQFLGLPCEQLIQQNGLTFRVQCQNER
VIVRYPMGEISIKTK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=304409 DV441_RS06740 WP_032825578.1 1392616..1392903(-) (comQ) [Haemophilus haemolyticus strain M28486]
ATGAATAAAGGCATGTCGCTCACGACCCTATTATTTTCTTTAGCTTTATTTAGCGTTTTATTTATTGCTTTCAATCAATG
GACGGCAAGCCAGCGAAAAAGTGCGGTGAAAACTTATCAAGATTTTCAGGCGATACAGGTTGCGGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTACCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTGTTCAATGTCAAAACGAACGC
GTCATTGTGCGTTATCCTATGGGTGAAATTTCGATAAAAACTAAGTAG

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1GKC6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

86.316

100

0.863

Multiple sequence alignment