Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DV441_RS06450 Genome accession   NZ_CP031238
Coordinates   1334048..1335001 (+) Length   317 a.a.
NCBI ID   WP_114892572.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain M28486     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1329048..1340001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV441_RS06425 - 1329346..1330119 (+) 774 WP_114892569.1 amino acid ABC transporter substrate-binding protein -
  DV441_RS06430 - 1330103..1330819 (+) 717 WP_005628353.1 amino acid ABC transporter permease -
  DV441_RS06435 - 1330829..1331596 (+) 768 WP_114892570.1 amino acid ABC transporter ATP-binding protein -
  DV441_RS06440 pnuC 1331762..1332439 (+) 678 WP_005628357.1 nicotinamide riboside transporter PnuC -
  DV441_RS06445 gorA 1332510..1333880 (-) 1371 WP_114892571.1 glutathione-disulfide reductase -
  DV441_RS06450 ceuB 1334048..1335001 (+) 954 WP_114892572.1 ABC transporter permease Machinery gene
  DV441_RS06455 - 1334994..1335953 (+) 960 WP_114892573.1 iron chelate uptake ABC transporter family permease subunit -
  DV441_RS06460 - 1335944..1336711 (+) 768 WP_114892574.1 ABC transporter ATP-binding protein -
  DV441_RS06465 - 1336942..1337850 (+) 909 WP_114892575.1 siderophore ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34950.03 Da        Isoelectric Point: 10.1497

>NTDB_id=304406 DV441_RS06450 WP_114892572.1 1334048..1335001(+) (ceuB) [Haemophilus haemolyticus strain M28486]
MFKRRYLVFLLVLLSAISLFLGISTVNLQGLLHFKGNQWQIFLDSRVPRLVSILIAGASLSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILLAILFFPGASMLLKTTIAVLVSFLGSLLFMTILARLKFKDTIFVPLVGMMFGNIISSITAFIAYQQDL
LQNLSGWLLGDFSLVMSGRYELLYFSIPMLIVSYLFAHRFSIVGMGKDFATNLGLNYNQVLYVGLIIVATVSSIIIVSVG
VIPFLGLIVPNLVTLYLGDNLKKNLSHTALLGAVFVLFCDILGRSLIYPYEISINAVVGVIGSGIFLYFLLKRDRYA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=304406 DV441_RS06450 WP_114892572.1 1334048..1335001(+) (ceuB) [Haemophilus haemolyticus strain M28486]
ATGTTTAAACGGCGATACTTAGTTTTTCTATTAGTTTTACTTTCCGCTATTTCTCTTTTTCTTGGCATAAGTACGGTTAA
TTTACAGGGATTGCTCCATTTTAAAGGCAATCAATGGCAGATTTTTCTTGATAGTCGCGTGCCACGTTTAGTGAGTATTT
TGATTGCGGGCGCGTCGTTGAGTATTTGTGGCTTGGTGATGCAGCAACTGAGCCGAAATCGTTTTGTATCGCCAACAACC
GCTGGCACAATGGATAGCGCGCGTCTTGGGATTTTGCTGGCGATTCTATTTTTTCCAGGTGCCTCGATGCTGCTGAAAAC
CACTATCGCGGTACTGGTGTCTTTCCTTGGCTCGCTGTTATTTATGACGATCCTAGCCCGCCTGAAGTTCAAAGATACGA
TTTTTGTACCTTTAGTAGGGATGATGTTCGGCAATATCATTAGTTCGATCACTGCTTTTATCGCCTATCAACAAGATTTG
TTGCAGAACCTTTCCGGCTGGTTACTAGGAGATTTTTCTCTTGTCATGAGCGGCCGCTACGAGCTGCTTTATTTCAGTAT
ACCCATGTTGATTGTATCTTATCTGTTTGCGCATCGTTTTTCTATCGTCGGAATGGGTAAAGATTTCGCTACCAATCTCG
GCTTAAATTATAACCAAGTGCTTTATGTTGGCTTGATTATTGTGGCAACGGTGTCGTCGATTATTATTGTATCTGTCGGC
GTAATTCCTTTTTTAGGCTTGATTGTGCCGAATCTCGTCACATTGTATTTGGGTGATAACTTGAAAAAAAACCTTTCTCA
CACCGCACTTTTAGGTGCTGTTTTTGTGTTGTTCTGCGATATTTTGGGACGAAGCCTAATTTACCCTTACGAGATTTCTA
TTAATGCTGTCGTTGGCGTGATTGGCAGCGGCATTTTCTTGTATTTCTTACTAAAACGGGATCGTTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.674

98.738

0.53

Multiple sequence alignment