Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   DV365_RS08395 Genome accession   NZ_CP031237
Coordinates   1710220..1710516 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain M12125     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1705220..1715516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV365_RS08385 - 1706821..1709784 (+) 2964 WP_114890681.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  DV365_RS08390 - 1710045..1710227 (+) 183 WP_005654546.1 shikimate 5-dehydrogenase -
  DV365_RS08395 HI0659 1710220..1710516 (+) 297 WP_005650837.1 helix-turn-helix transcriptional regulator Machinery gene
  DV365_RS08400 - 1710677..1712593 (+) 1917 WP_105905590.1 ABC transporter ATP-binding protein -
  DV365_RS08405 - 1712603..1713139 (+) 537 WP_038439524.1 type I DNA topoisomerase -
  DV365_RS08410 - 1713155..1713706 (+) 552 WP_038439523.1 Sua5/YciO/YrdC/YwlC family protein -
  DV365_RS08415 aroE 1713710..1714516 (+) 807 WP_105905591.1 shikimate dehydrogenase -
  DV365_RS08420 - 1714730..1715293 (+) 564 WP_021034570.1 DNA-3-methyladenine glycosylase I -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=304377 DV365_RS08395 WP_005650837.1 1710220..1710516(+) (HI0659) [Haemophilus influenzae strain M12125]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=304377 DV365_RS08395 WP_005650837.1 1710220..1710516(+) (HI0659) [Haemophilus influenzae strain M12125]
ATGAATAAAATTAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTACGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAGCTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1

Multiple sequence alignment