Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   DV365_RS06755 Genome accession   NZ_CP031237
Coordinates   1381402..1381914 (-) Length   170 a.a.
NCBI ID   WP_112103684.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M12125     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1376402..1386914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV365_RS06740 comQ 1379708..1379995 (-) 288 WP_012055313.1 DUF5374 domain-containing protein Machinery gene
  DV365_RS06745 comP 1379988..1380671 (-) 684 WP_005648030.1 DUF2572 family protein Machinery gene
  DV365_RS06750 comO 1380686..1381402 (-) 717 WP_005651546.1 type II secretion system protein J Machinery gene
  DV365_RS06755 comN 1381402..1381914 (-) 513 WP_112103684.1 type II secretion system protein Machinery gene
  DV365_RS06760 suhB 1382114..1382917 (+) 804 WP_114890559.1 inositol-1-monophosphatase -
  DV365_RS06765 nrfE 1383026..1384933 (+) 1908 WP_042611089.1 heme lyase NrfEFG subunit NrfE -
  DV365_RS06770 - 1384933..1385463 (+) 531 WP_114890560.1 DsbE family thiol:disulfide interchange protein -
  DV365_RS06775 nrfF 1385460..1386614 (+) 1155 WP_114890561.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19821.00 Da        Isoelectric Point: 8.7271

>NTDB_id=304373 DV365_RS06755 WP_112103684.1 1381402..1381914(-) (comN) [Haemophilus influenzae strain M12125]
MQKGMTLVELLIGLAIISIALNFAAPLWQTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=304373 DV365_RS06755 WP_112103684.1 1381402..1381914(-) (comN) [Haemophilus influenzae strain M12125]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGCGCTGAATTTTGCCGCGCCATT
ATGGCAAACGGATTCACCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGCGACACAGCAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCTCATTTTTACTACCCTTA
TTTTCCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCTGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACTAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

98.235

100

0.982

Multiple sequence alignment