Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   DV365_RS06740 Genome accession   NZ_CP031237
Coordinates   1379708..1379995 (-) Length   95 a.a.
NCBI ID   WP_012055313.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M12125     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1374708..1384995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV365_RS06730 nrdR 1375778..1376227 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  DV365_RS06735 recC 1376282..1379662 (-) 3381 WP_114890558.1 exodeoxyribonuclease V subunit gamma -
  DV365_RS06740 comQ 1379708..1379995 (-) 288 WP_012055313.1 DUF5374 domain-containing protein Machinery gene
  DV365_RS06745 comP 1379988..1380671 (-) 684 WP_005648030.1 DUF2572 family protein Machinery gene
  DV365_RS06750 comO 1380686..1381402 (-) 717 WP_005651546.1 type II secretion system protein J Machinery gene
  DV365_RS06755 comN 1381402..1381914 (-) 513 WP_112103684.1 type II secretion system protein Machinery gene
  DV365_RS06760 suhB 1382114..1382917 (+) 804 WP_114890559.1 inositol-1-monophosphatase -
  DV365_RS06765 nrfE 1383026..1384933 (+) 1908 WP_042611089.1 heme lyase NrfEFG subunit NrfE -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11021.82 Da        Isoelectric Point: 9.2205

>NTDB_id=304370 DV365_RS06740 WP_012055313.1 1379708..1379995(-) (comQ) [Haemophilus influenzae strain M12125]
MNKGMSFITLLFSLALFSVLFLVFNQWTASQRKSAVKTYQDFQAIQIAENQAQRQFLGLACEQLIQQNGLTFRIQCENER
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=304370 DV365_RS06740 WP_012055313.1 1379708..1379995(-) (comQ) [Haemophilus influenzae strain M12125]
ATGAATAAAGGAATGTCTTTTATTACATTGTTATTTTCTTTAGCTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAAGCCAAAGAAAAAGTGCGGTAAAAACTTATCAAGATTTTCAGGCAATACAGATTGCGGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCAATGTGAAAATGAACGT
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

97.895

100

0.979

Multiple sequence alignment