Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   DV400_RS09205 Genome accession   NZ_CP031236
Coordinates   1859178..1859474 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain M25267     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1854178..1864474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV400_RS09750 - 1855806..1855888 (+) 83 Protein_1763 PT domain-containing protein -
  DV400_RS09770 - 1855965..1856349 (+) 385 Protein_1764 TonB-dependent receptor plug domain-containing protein -
  DV400_RS09195 - 1856557..1858857 (+) 2301 WP_230304886.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  DV400_RS09200 - 1859003..1859185 (+) 183 Protein_1766 type II toxin-antitoxin system RelE/ParE family toxin -
  DV400_RS09205 HI0659 1859178..1859474 (+) 297 WP_005650837.1 helix-turn-helix transcriptional regulator Machinery gene
  DV400_RS09210 - 1859658..1861574 (+) 1917 WP_114892243.1 ABC transporter ATP-binding protein -
  DV400_RS09215 - 1861584..1862120 (+) 537 WP_050949051.1 type I DNA topoisomerase -
  DV400_RS09220 - 1862136..1862687 (+) 552 WP_050949052.1 Sua5/YciO/YrdC/YwlC family protein -
  DV400_RS09225 aroE 1862691..1863509 (+) 819 WP_050949053.1 shikimate dehydrogenase -
  DV400_RS09230 - 1863506..1864063 (+) 558 WP_050949054.1 DNA-3-methyladenine glycosylase I -

Sequence


Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=304344 DV400_RS09205 WP_005650837.1 1859178..1859474(+) (HI0659) [Haemophilus influenzae strain M25267]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=304344 DV400_RS09205 WP_005650837.1 1859178..1859474(+) (HI0659) [Haemophilus influenzae strain M25267]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGCGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTGTTAAAATTG
CTCGCTCCCTTGGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains


Predicted by InterproScan.

(41-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1


Multiple sequence alignment