Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   U15A_RS20105 Genome accession   NZ_CP035720
Coordinates   4034766..4035434 (-) Length   222 a.a.
NCBI ID   WP_001296533.1    Uniprot ID   B7N279
Organism   Escherichia coli strain U15A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4029766..4040434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U15A_RS20075 (U15A_02417) rfaQ 4029943..4031001 (-) 1059 WP_000360408.1 lipopolysaccharide core heptosyltransferase RfaQ -
  U15A_RS20080 (U15A_02418) waaA 4031415..4032692 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  U15A_RS20085 (U15A_02419) coaD 4032700..4033179 (+) 480 WP_001171854.1 pantetheine-phosphate adenylyltransferase -
  U15A_RS20090 (U15A_02420) mutM 4033218..4034027 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  U15A_RS20095 (U15A_02421) rpmG 4034125..4034292 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  U15A_RS20100 (U15A_02422) rpmB 4034313..4034549 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  U15A_RS20105 (U15A_02423) radC 4034766..4035434 (-) 669 WP_001296533.1 DNA repair protein RadC Machinery gene
  U15A_RS20110 (U15A_02424) coaBC 4035606..4036826 (+) 1221 WP_000050112.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  U15A_RS20115 (U15A_02425) dut 4036804..4037262 (+) 459 WP_000976070.1 dUTP diphosphatase -
  U15A_RS20120 (U15A_02426) slmA 4037369..4037965 (+) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  U15A_RS20125 (U15A_02427) pyrE 4038002..4038643 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  U15A_RS20130 (U15A_02428) rph 4038709..4039425 (-) 717 WP_001247093.1 ribonuclease PH -
  U15A_RS20135 (U15A_02429) yicC 4039552..4040415 (+) 864 WP_000621332.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25286.40 Da        Isoelectric Point: 7.9748

>NTDB_id=304343 U15A_RS20105 WP_001296533.1 4034766..4035434(-) (radC) [Escherichia coli strain U15A]
MKNNVQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=304343 U15A_RS20105 WP_001296533.1 4034766..4035434(-) (radC) [Escherichia coli strain U15A]
GTGAAAAACAATGTACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACAGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(10-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7N279

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496