Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   DV400_RS07840 Genome accession   NZ_CP031236
Coordinates   1586779..1587498 (-) Length   239 a.a.
NCBI ID   WP_050948682.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M25267     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1581779..1592498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV400_RS07820 nrdR 1581891..1582340 (-) 450 WP_005627362.1 transcriptional regulator NrdR -
  DV400_RS07825 recC 1582402..1585773 (-) 3372 WP_050948679.1 exodeoxyribonuclease V subunit gamma -
  DV400_RS07830 comQ 1585819..1586106 (-) 288 WP_050948680.1 DUF5374 domain-containing protein Machinery gene
  DV400_RS07835 comP 1586099..1586782 (-) 684 WP_050948681.1 DUF2572 family protein Machinery gene
  DV400_RS07840 comO 1586779..1587498 (-) 720 WP_050948682.1 type II secretion system protein J Machinery gene
  DV400_RS07845 comN 1587498..1588010 (-) 513 WP_050948683.1 type II secretion system protein Machinery gene
  DV400_RS07850 suhB 1588210..1589013 (+) 804 WP_050948684.1 inositol-1-monophosphatase -
  DV400_RS07855 nrfE 1589122..1591029 (+) 1908 WP_050948685.1 heme lyase NrfEFG subunit NrfE -
  DV400_RS07860 - 1591029..1591559 (+) 531 WP_050948686.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26805.14 Da        Isoelectric Point: 9.5423

>NTDB_id=304339 DV400_RS07840 WP_050948682.1 1586779..1587498(-) (comO) [Haemophilus influenzae strain M25267]
MMKTLLKGQTLLALMISLALSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITKLQFNWLIEGKGLEIKLKGNLKQASNISYETSIVVALWNQKQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=304339 DV400_RS07840 WP_050948682.1 1586779..1587498(-) (comO) [Haemophilus influenzae strain M25267]
ATGATGAAAACATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCACTGGCTTTGTCTTCTTTATTGCTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACACAAAATCAACACATGCTATTGCATTTAAAATTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGATGTATTGGTAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGCAACGCTGGGGGAGGTTGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAAGCTACAATTTAATTGGTTAATCGAAGGAAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAGCCTCAAACATCAGTTATGAAACCTCCATTGTTGTTGCGCTCTGGAATCAAAAACAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

97.059

99.582

0.967

Multiple sequence alignment