Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DV400_RS00340 Genome accession   NZ_CP031236
Coordinates   60070..60723 (+) Length   217 a.a.
NCBI ID   WP_076773806.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M25267     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 55070..65723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV400_RS00315 - 55477..56481 (-) 1005 WP_050949419.1 ornithine carbamoyltransferase -
  DV400_RS00320 - 56896..57714 (+) 819 WP_021034534.1 Cof-type HAD-IIB family hydrolase -
  DV400_RS00325 crcB 57714..58100 (+) 387 WP_021034533.1 fluoride efflux transporter CrcB -
  DV400_RS00330 recX 58097..58555 (-) 459 WP_050949418.1 recombination regulator RecX -
  DV400_RS00335 recA 58634..59698 (-) 1065 WP_050848032.1 recombinase RecA Machinery gene
  DV400_RS00340 sxy/tfoX 60070..60723 (+) 654 WP_076773806.1 DNA transformation protein TfoX Regulator

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25189.64 Da        Isoelectric Point: 9.8616

>NTDB_id=304311 DV400_RS00340 WP_076773806.1 60070..60723(+) (sxy/tfoX) [Haemophilus influenzae strain M25267]
MNIKDGHIDKVCSLLDLLVGNVTFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEDELATQLIKLGCEPFTTNELNKRFVL
SQYYALTEQVLRNNMLCRKLIILSIKQILEQKLEYTLRKLNRLKDLPNLTIKHERALIKVGITDVVMLREIGAENALVEL
KKNGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=304311 DV400_RS00340 WP_076773806.1 60070..60723(+) (sxy/tfoX) [Haemophilus influenzae strain M25267]
ATGAATATAAAGGATGGGCATATAGATAAAGTTTGCTCTTTGCTAGACCTGTTAGTAGGAAATGTTACCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATCTGGCAAAATAAAAAGCTTTATTTACGAGGTG
AAGATGAGCTTGCAACTCAATTAATAAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTACTGAACAGGTTTTACGTAATAATATGTTATGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATATACGTTAAGAAAGTTAAATCGATTAAAGGATTTACCCAATTTAACGATTAAACACG
AAAGAGCTTTAATAAAAGTTGGTATTACAGATGTTGTGATGCTAAGAGAAATTGGTGCAGAAAATGCATTGGTAGAATTA
AAGAAAAATGGCAGTGGTGCTACGCTTGATTTTTATTGGAAGTTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTGAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(19-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

91.705

100

0.917

Multiple sequence alignment