Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DV702_RS11815 Genome accession   NZ_CP031230
Coordinates   2474718..2475668 (-) Length   316 a.a.
NCBI ID   WP_114924940.1    Uniprot ID   A0A345NZ85
Organism   Sporosarcina sp. PTS2304     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2469718..2480668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV702_RS11790 (DV702_11790) - 2470325..2471488 (+) 1164 WP_114924934.1 IS256 family transposase -
  DV702_RS17240 - 2471838..2471969 (+) 132 WP_256359799.1 hypothetical protein -
  DV702_RS11800 (DV702_11800) - 2472023..2472985 (-) 963 WP_114924937.1 siderophore ABC transporter substrate-binding protein -
  DV702_RS11805 (DV702_11805) - 2473014..2473778 (-) 765 WP_114924938.1 ABC transporter ATP-binding protein -
  DV702_RS11810 (DV702_11810) - 2473775..2474725 (-) 951 WP_114924939.1 iron chelate uptake ABC transporter family permease subunit -
  DV702_RS11815 (DV702_11815) ceuB 2474718..2475668 (-) 951 WP_114924940.1 ABC transporter permease Machinery gene
  DV702_RS11820 (DV702_11820) - 2475916..2476779 (-) 864 WP_114924941.1 DUF6612 family protein -
  DV702_RS11825 (DV702_11825) hflX 2477068..2478336 (-) 1269 WP_114924942.1 GTPase HflX -
  DV702_RS11830 (DV702_11830) - 2478393..2479094 (-) 702 WP_114924943.1 VOC family protein -
  DV702_RS11835 (DV702_11835) - 2479276..2479743 (+) 468 WP_114924944.1 nucleoside deaminase -
  DV702_RS11840 (DV702_11840) nfsA 2479841..2480572 (+) 732 WP_114924945.1 oxygen-insensitive NADPH nitroreductase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34921.23 Da        Isoelectric Point: 10.1614

>NTDB_id=304275 DV702_RS11815 WP_114924940.1 2474718..2475668(-) (ceuB) [Sporosarcina sp. PTS2304]
MKKRYLFSAVILLSFLSLFVGASRITPMDLLDWRSEETEIFLISRLPRLVAILLAGAGMSIAGLIMQQLSRNKFVSPTTA
GTLDATKLGILVSMIIFTNATLLEKMAVSFTFALLGTFLFMQILDRIKFKDAIFIPLVGLMFGNILSSIATFFAYKANVI
QNMSAWLQGDFSMVMKGRYELLYISIPVLLITYLYANRFTVAGMGEDFSKNLGLAYKRIVNIGLILVALITTTVVLTVGL
IPFLGLIIPNIVSIFKGDHLQKTLPHTALLGAIFLLICDILGRVIIFPYEISISLMVGVIGSAIFLYLLFRGKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=304275 DV702_RS11815 WP_114924940.1 2474718..2475668(-) (ceuB) [Sporosarcina sp. PTS2304]
ATGAAGAAACGTTATTTATTTTCAGCCGTTATTCTGCTCTCCTTTCTTTCTTTATTTGTTGGGGCAAGTCGCATTACTCC
AATGGATTTACTAGACTGGCGTTCAGAAGAAACAGAGATTTTCTTAATCAGTCGATTGCCGCGCTTAGTCGCTATTTTAT
TGGCTGGAGCAGGGATGAGTATTGCGGGGTTGATCATGCAACAACTAAGCCGCAATAAATTCGTTTCACCTACGACAGCT
GGAACATTGGATGCGACAAAATTAGGTATTTTAGTATCAATGATTATTTTTACCAACGCAACATTATTAGAAAAGATGGC
GGTATCTTTTACGTTTGCATTGCTCGGCACGTTCTTATTCATGCAAATACTAGATCGGATCAAGTTTAAAGATGCGATTT
TTATCCCTCTCGTCGGGTTGATGTTCGGTAATATCCTCTCATCTATCGCCACCTTTTTCGCATACAAGGCAAACGTGATT
CAAAACATGTCTGCTTGGTTGCAAGGCGACTTTTCGATGGTTATGAAAGGCCGTTACGAGCTTTTGTACATTAGCATACC
GGTCTTACTCATTACATATTTATATGCGAATCGTTTTACTGTTGCAGGAATGGGAGAAGACTTCTCCAAAAACTTAGGGT
TGGCCTACAAACGAATTGTTAATATCGGTTTAATTTTAGTCGCGTTAATTACGACAACTGTCGTATTAACAGTAGGTTTA
ATACCATTCTTGGGGCTTATCATCCCGAATATCGTCTCGATTTTCAAAGGTGATCATCTGCAGAAAACATTACCACATAC
CGCATTGCTTGGCGCCATTTTTCTTTTAATTTGTGATATTTTAGGCAGGGTTATTATTTTCCCGTATGAAATATCCATTA
GTTTAATGGTTGGCGTTATTGGTAGCGCGATCTTCCTTTACTTGTTGTTTAGGGGGAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345NZ85

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.396

99.051

0.519

Multiple sequence alignment