Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DV702_RS04590 Genome accession   NZ_CP031230
Coordinates   982260..983954 (+) Length   564 a.a.
NCBI ID   WP_114923686.1    Uniprot ID   A0A345NVL5
Organism   Sporosarcina sp. PTS2304     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 977260..988954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV702_RS04565 (DV702_04565) xseB 977726..977968 (+) 243 WP_114923683.1 exodeoxyribonuclease VII small subunit -
  DV702_RS04570 (DV702_04570) - 977961..978845 (+) 885 WP_114923684.1 polyprenyl synthetase family protein -
  DV702_RS04575 (DV702_04575) dxs 979000..980898 (+) 1899 WP_114925835.1 1-deoxy-D-xylulose-5-phosphate synthase -
  DV702_RS04580 (DV702_04580) - 980895..981716 (+) 822 WP_114923685.1 TlyA family RNA methyltransferase -
  DV702_RS04585 (DV702_04585) ahrC 981794..982243 (+) 450 WP_114925836.1 transcriptional regulator AhrC/ArgR -
  DV702_RS04590 (DV702_04590) recN 982260..983954 (+) 1695 WP_114923686.1 DNA repair protein RecN Machinery gene
  DV702_RS04595 (DV702_04595) - 984070..985026 (+) 957 WP_114923687.1 SpoIVB peptidase S55 domain-containing protein -
  DV702_RS04600 (DV702_04600) spo0A 986285..987079 (+) 795 WP_114923688.1 sporulation transcription factor Spo0A -

Sequence

Protein


Download         Length: 564 a.a.        Molecular weight: 64028.97 Da        Isoelectric Point: 4.8204

>NTDB_id=304262 DV702_RS04590 WP_114923686.1 982260..983954(+) (recN) [Sporosarcina sp. PTS2304]
MLSELSIKNFAIIEQLEITFDEGLTVLTGETGAGKSIIIDAVQLLAGGRGSQEFIRHGSKKAELQGMFTIDETQSSVMER
LEEFGIEAEDGVIILRRDLNTSGKSVCRVNGKLVTIAILREIGSLLIDIHGQHENQELMNERRHIHLLDFFIGEPIERAM
STYSEIYDKYKKLQQVIAAKTQDEQQIAQKIDLYQFQLEEIDAANLVIGEEEELESERVKLQHFHRIFDRLNTSYEAIAM
ESRGLDWVGNAMSDLEEAASIDAELQPLSETVNTSFYSLQDVSHDLKRLIDSMEFNPDRLNFVEERLALFLTLKRKYGKS
LEDILLYRDKIADALDQLVNRDERLHQNQELLTQYVKDLEIEANELSVIRKKAALRLERGIEEQLKQLYMDKATFKVQIK
QKEPNQFDATGFDEVTFMISTNLGEPLKPLARVASGGELSRMMLALKTIFSQHQGVTSIIFDEVDTGVSGRVAQSIAEKI
AMISSHSQVLCISHLPQVAAMADHHYLIKKEVHDGRTTTAIHDVMEKERTEELSRMLSGAEITPLTLEHAKELLVLANQR
KQTF

Nucleotide


Download         Length: 1695 bp        

>NTDB_id=304262 DV702_RS04590 WP_114923686.1 982260..983954(+) (recN) [Sporosarcina sp. PTS2304]
TTGTTAAGTGAACTTTCTATTAAAAACTTTGCGATTATCGAGCAATTGGAAATTACATTTGATGAAGGATTAACAGTATT
GACGGGTGAAACGGGTGCCGGAAAGTCGATTATCATTGATGCGGTTCAATTATTGGCGGGCGGACGCGGATCACAAGAAT
TTATTCGGCATGGTTCTAAAAAAGCTGAACTTCAAGGGATGTTCACTATCGATGAAACACAGTCGTCCGTTATGGAGCGT
TTAGAGGAATTTGGGATTGAAGCCGAAGATGGAGTCATTATTCTTCGCAGAGATTTGAATACGAGCGGAAAATCGGTCTG
CCGTGTGAATGGTAAGCTAGTGACGATTGCGATTTTACGTGAAATTGGTTCGTTGTTAATCGACATTCACGGGCAACATG
AGAACCAAGAGCTGATGAATGAACGACGTCATATTCATTTGTTGGACTTTTTTATCGGGGAACCGATTGAACGTGCGATG
TCTACATATAGTGAAATTTACGATAAATATAAGAAACTACAGCAAGTTATTGCGGCGAAAACGCAGGATGAGCAACAGAT
TGCCCAGAAAATTGATCTATATCAGTTTCAATTGGAAGAGATCGATGCGGCGAATTTAGTCATCGGGGAAGAAGAGGAAC
TGGAGTCTGAACGTGTAAAACTTCAGCATTTCCACCGGATTTTTGATCGATTGAATACGTCTTATGAAGCGATCGCTATG
GAGTCGCGTGGGCTAGACTGGGTCGGCAATGCGATGAGTGACTTGGAGGAAGCTGCTTCAATCGATGCCGAGTTGCAGCC
GTTGTCAGAAACGGTCAACACGTCGTTTTATTCATTGCAGGACGTTTCGCATGATTTGAAGCGTTTAATTGACAGCATGG
AGTTCAATCCGGATCGCTTGAATTTTGTAGAAGAACGTTTGGCGTTATTTTTGACGTTAAAACGAAAATATGGTAAATCA
TTAGAAGATATTTTATTGTATCGAGACAAAATTGCGGATGCGTTAGATCAATTAGTCAATCGTGACGAACGGTTGCATCA
AAACCAAGAATTATTGACACAATACGTAAAAGACTTGGAAATTGAAGCGAATGAATTATCCGTAATTCGTAAAAAAGCAG
CCCTTCGTCTTGAACGAGGAATTGAAGAGCAACTAAAGCAATTGTATATGGATAAAGCGACATTTAAGGTTCAAATTAAG
CAAAAAGAACCAAATCAATTCGATGCGACGGGTTTTGATGAAGTGACATTTATGATTTCCACGAATTTAGGCGAACCGTT
GAAGCCACTGGCGCGCGTAGCTTCAGGCGGCGAATTGTCTCGAATGATGCTCGCGCTGAAAACGATTTTCTCGCAGCACC
AAGGTGTCACGTCAATCATTTTTGATGAAGTAGATACAGGTGTCAGCGGACGGGTGGCACAATCGATCGCAGAAAAAATT
GCGATGATATCGAGCCACTCCCAAGTGCTATGTATTTCTCACTTGCCGCAAGTCGCTGCGATGGCGGATCATCATTATTT
GATCAAAAAAGAAGTGCATGATGGACGGACAACGACTGCCATTCATGATGTCATGGAGAAAGAACGAACTGAAGAACTTT
CGCGTATGTTATCAGGTGCCGAAATTACGCCGCTGACATTAGAACATGCGAAAGAATTACTTGTGCTAGCCAATCAACGA
AAGCAAACGTTTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345NVL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.125

100

0.543

Multiple sequence alignment