Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EPB54_RS12095 Genome accession   NZ_CP035701
Coordinates   2375947..2376546 (-) Length   199 a.a.
NCBI ID   WP_025553812.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2012AW-0154     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2370947..2381546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB54_RS12070 - 2371051..2371710 (-) 660 WP_005397228.1 PAS domain-containing protein -
  EPB54_RS12075 - 2371739..2373016 (-) 1278 WP_005479508.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  EPB54_RS12080 - 2373032..2373412 (-) 381 WP_154119831.1 RidA family protein -
  EPB54_RS12085 - 2373731..2374990 (+) 1260 WP_195723296.1 amino acid permease -
  EPB54_RS12090 aqpZ 2375197..2375895 (+) 699 WP_005460095.1 aquaporin Z -
  EPB54_RS12095 recR 2375947..2376546 (-) 600 WP_025553812.1 recombination mediator RecR Machinery gene
  EPB54_RS12100 - 2376577..2376906 (-) 330 WP_154119838.1 YbaB/EbfC family nucleoid-associated protein -
  EPB54_RS12105 dnaX 2376989..2379124 (-) 2136 WP_154119840.1 DNA polymerase III subunit gamma/tau -
  EPB54_RS12110 apt 2379133..2379678 (-) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  EPB54_RS12115 - 2379844..2380248 (-) 405 WP_042771344.1 YbaN family protein -
  EPB54_RS26900 - 2380264..2380395 (-) 132 WP_005380608.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21711.70 Da        Isoelectric Point: 5.7468

>NTDB_id=304249 EPB54_RS12095 WP_025553812.1 2375947..2376546(-) (recR) [Vibrio parahaemolyticus strain 2012AW-0154]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDVSEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=304249 EPB54_RS12095 WP_025553812.1 2375947..2376546(-) (recR) [Vibrio parahaemolyticus strain 2012AW-0154]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCGGCAGTCGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATGTTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAAGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTCGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.719

100

0.437