Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PLA107_RS29120 Genome accession   NZ_CP031225
Coordinates   5042587..5044179 (+) Length   530 a.a.
NCBI ID   WP_005746394.1    Uniprot ID   A0AAD0M1T3
Organism   Pseudomonas amygdali pv. lachrymans str. M301315     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5037587..5049179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PLA107_RS29100 (PLA107_024635) pgeF 5039369..5040097 (-) 729 WP_005746396.1 peptidoglycan editing factor PgeF -
  PLA107_RS29105 (PLA107_024640) rluD 5040094..5041056 (-) 963 WP_005746395.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PLA107_RS29110 (PLA107_024645) - 5041206..5042228 (+) 1023 WP_005733851.1 outer membrane protein assembly factor BamD -
  PLA107_RS29115 (PLA107_024650) - 5042358..5042597 (+) 240 WP_002551997.1 PP0621 family protein -
  PLA107_RS29120 (PLA107_024655) pilS 5042587..5044179 (+) 1593 WP_005746394.1 ATP-binding protein Regulator
  PLA107_RS29125 (PLA107_024660) pilR 5044182..5045519 (+) 1338 WP_005746393.1 sigma-54 dependent transcriptional regulator Regulator
  PLA107_RS29155 (PLA107_024690) - 5046664..5047281 (+) 618 WP_002551994.1 TetR/AcrR family transcriptional regulator -
  PLA107_RS29160 (PLA107_024695) - 5047363..5048472 (+) 1110 WP_005746392.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58096.93 Da        Isoelectric Point: 7.0058

>NTDB_id=304237 PLA107_RS29120 WP_005746394.1 5042587..5044179(+) (pilS) [Pseudomonas amygdali pv. lachrymans str. M301315]
MTADTPSLASPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQLF
SLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQVSEVLAEQRAADVDSLEELNALILQRMRTGILVLDANRQVLLANQGALTLLGHERLVGQVID
AYSPQLVERLRQWLVNPIMVPRSVTTSPIGPVLQPSFAALNRGDQRQTLIFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAADRRLGQIIHDQSGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFIAEFRSSAAPN
QSIHVDISPGTLTTRMDSGQLTQIMTNLLQNGLRYSGRNHSSAQVWLKLHHDRQSDLPILEVQDDGPGVSEQHLAKLFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYVPRQGGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=304237 PLA107_RS29120 WP_005746394.1 5042587..5044179(+) (pilS) [Pseudomonas amygdali pv. lachrymans str. M301315]
GTGACCGCTGACACGCCCTCGCTTGCCAGCCCACAGGCGCAAAGGATTCTGCGGCTTTACCACCTTTATCGACTGACCAT
CGGCGTGGTACTGGTCCTGCTGATTTCCAGCAGTCTGGAAACCGAACTGTTGCAACTGGCCAATCCAAACCTGTTCCGCT
CGGGTTGCTGGCTGTATCTGGTGTTCAACATTCTGGTCGTCGTGCTGCTGGAGCGTCCCAGCCGTCAGGCGCAGCTGTTC
AGTCTGGCAATGACTGACGCAATCATGCTCTCTGCGCTGTTCTACGCGGCGGGTGGCCCTTCCAGCGGCATCGGCAATCT
GTTGATTGCTTCCGTAGCAATCAGCAATGTATTGCTGCGGGGCCGTATCGGTTTGCTGATCGCCGCCGTTTCTGCCATCG
GCATCATCTACCTGACGTTCTATATCAGCTTCGGTACACCGTCGGTTTCCAACGACTACGTGCAGGCCGGCTCTCTGGGT
GCCCTGTGCTTCGCCGCCGCACTGCTGGTGCAGGCGCTGACAGCGCGCATGCAGGTCAGCGAAGTGCTGGCCGAACAGCG
TGCAGCGGATGTCGACAGCCTTGAAGAACTCAACGCGCTGATCCTGCAACGCATGCGTACCGGCATTCTGGTACTGGATG
CCAACCGTCAGGTGCTGCTGGCCAATCAAGGTGCCCTTACCCTACTGGGCCACGAGCGACTGGTCGGCCAGGTTATCGAC
GCTTACTCGCCGCAACTGGTGGAACGCCTGCGCCAGTGGCTCGTCAACCCGATCATGGTGCCGCGTAGCGTCACGACTTC
ACCCATCGGGCCGGTGCTGCAACCGAGCTTTGCCGCGCTCAATCGTGGCGATCAGCGCCAGACGCTGATCTTTCTTGAAG
ACCTGTCGCAAATTGCTCATCAGGCGCAGCAGCTCAAGCTCGCCGCACTGGGACGCCTGACCGCCGGGATTGCCCACGAG
ATACGCAACCCGCTGGGCGCAGTCAGCCATGCCGCACAGTTACTCAACGAATCTGAAGAACTCAGCGCAGCGGACCGACG
CCTGGGGCAGATCATTCATGACCAGTCGGGGCGTATTGATCGGGTCATCGAAAATGTTCTGCAATTGTCGCGCAGACGCG
AAGCGCAGCCCGAACTGCTGGACCTGAAAACCTGGCTGGAACACTTTATCGCTGAATTTCGCAGTTCCGCTGCGCCCAAT
CAGTCGATTCATGTCGACATCAGTCCCGGAACGCTGACAACCCGCATGGATTCAGGGCAACTGACCCAGATCATGACCAA
CCTGCTACAGAACGGCCTGCGCTACAGCGGCAGAAATCATTCGTCAGCGCAGGTCTGGCTGAAGCTGCATCACGACCGAC
AAAGCGATTTGCCCATTCTGGAAGTACAGGACGACGGGCCAGGGGTCAGCGAGCAACATTTGGCCAAGCTGTTCGAGCCG
TTTTTCACCACGGAAAGCAAAGGCACCGGTCTTGGTCTATATCTGTCACGCGAGCTGTGCGAAAGCAATCAGGCGCACCT
GGAATACGTCCCGCGGCAAGGTGGCGGCAGTTGTCTGCGCATAACCTTCGCCCACCCGTTCAAAACGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.394

100

0.615

Multiple sequence alignment