Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   VC395_RS09520 Genome accession   NC_012582
Coordinates   2020643..2021119 (+) Length   158 a.a.
NCBI ID   WP_000148675.1    Uniprot ID   Q9KR57
Organism   Vibrio cholerae O395     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2015643..2026119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VC395_RS09505 (VC395_1897) nagA 2016272..2017408 (+) 1137 WP_001185226.1 N-acetylglucosamine-6-phosphate deacetylase -
  VC395_RS09510 (VC395_1898) - 2017831..2020176 (+) 2346 WP_001211290.1 exo-alpha-sialidase -
  VC395_RS09515 (VC395_1899) - 2020323..2020499 (-) 177 WP_001211490.1 AlpA family transcriptional regulator -
  VC395_RS09520 (VC395_1900) radC 2020643..2021119 (+) 477 WP_000148675.1 DNA repair protein RadC Machinery gene
  VC395_RS21420 (VC395_1901) - 2021116..2021247 (+) 132 Protein_1774 DUF2787 domain-containing protein -
  VC395_RS09525 (VC395_1902) - 2021349..2022044 (-) 696 WP_000213836.1 hypothetical protein -
  VC395_RS09540 (VC395_1905) - 2023261..2024220 (-) 960 WP_001909624.1 tape measure protein -
  VC395_RS09545 (VC395_1906) - 2024436..2024795 (-) 360 WP_000290080.1 phage tail assembly protein -
  VC395_RS09550 (VC395_1907) - 2024844..2025215 (-) 372 WP_000401420.1 hypothetical protein -
  VC395_RS09555 (VC395_1908) - 2025276..2025854 (-) 579 WP_000059473.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18274.71 Da        Isoelectric Point: 6.9191

>NTDB_id=30423 VC395_RS09520 WP_000148675.1 2020643..2021119(+) (radC) [Vibrio cholerae O395]
MTHFPRHRYLLSQRAYEHRVLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEIFAVLFLDNQHRLIEFKELFRG
TVDAASVYPREVLKEALNVNAAAVIFAHNHPSGDPEPSQADRRITQRLKDALSLVDIRVLDHVVVGKSSVSFAERGWL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=30423 VC395_RS09520 WP_000148675.1 2020643..2021119(+) (radC) [Vibrio cholerae O395]
ATGACTCATTTCCCTCGCCACCGCTATCTACTCTCGCAACGAGCTTATGAGCATCGAGTACTGGAAGAAGCAGCAGAGAT
CCTTGAACAGCGTTATGTGCGCGGTGAAACCTTTGCACGTACGGAAAACACCACGGAATACTTACGCTGTAAACTTGCTG
GATATGAGCACGAAATCTTTGCCGTACTGTTTTTGGATAACCAGCATCGGCTAATTGAATTTAAGGAGCTATTTCGCGGT
ACGGTCGATGCCGCCAGTGTCTACCCAAGAGAGGTATTAAAGGAGGCACTAAACGTTAACGCAGCAGCGGTGATCTTTGC
CCATAACCACCCCTCTGGCGATCCTGAGCCTTCACAAGCCGATAGGCGTATTACTCAGCGCTTAAAAGACGCCTTATCAC
TGGTAGATATTCGTGTGCTAGACCATGTGGTCGTTGGCAAAAGCAGTGTGTCATTTGCAGAAAGGGGCTGGCTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(41-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KR57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.286

88.608

0.437

Multiple sequence alignment