Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PLA107_RS11650 Genome accession   NZ_CP031225
Coordinates   1327983..1328699 (+) Length   238 a.a.
NCBI ID   WP_010214839.1    Uniprot ID   -
Organism   Pseudomonas amygdali pv. lachrymans str. M301315     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1322983..1333699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PLA107_RS11630 (PLA107_006720) - 1323063..1323686 (+) 624 WP_004657835.1 glutathione S-transferase -
  PLA107_RS11635 (PLA107_006725) - 1323870..1324802 (+) 933 WP_002552672.1 ABC transporter ATP-binding protein -
  PLA107_RS11640 (PLA107_006730) - 1324799..1325587 (+) 789 WP_005743842.1 ABC transporter permease -
  PLA107_RS11645 (PLA107_006735) comA 1325724..1327940 (+) 2217 WP_005743843.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PLA107_RS11650 (PLA107_006740) exbB 1327983..1328699 (+) 717 WP_010214839.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PLA107_RS11655 (PLA107_006745) - 1328696..1329127 (+) 432 WP_002552677.1 biopolymer transporter ExbD -
  PLA107_RS11660 (PLA107_006750) lpxK 1329127..1330122 (+) 996 WP_005743845.1 tetraacyldisaccharide 4'-kinase -
  PLA107_RS11665 (PLA107_006755) - 1330140..1330325 (+) 186 WP_002552679.1 Trm112 family protein -
  PLA107_RS11670 (PLA107_006760) kdsB 1330322..1331086 (+) 765 WP_004657844.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PLA107_RS11675 (PLA107_006765) murB 1331121..1332140 (+) 1020 WP_005743846.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25818.38 Da        Isoelectric Point: 7.9113

>NTDB_id=304221 PLA107_RS11650 WP_010214839.1 1327983..1328699(+) (exbB) [Pseudomonas amygdali pv. lachrymans str. M301315]
MIEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=304221 PLA107_RS11650 WP_010214839.1 1327983..1328699(+) (exbB) [Pseudomonas amygdali pv. lachrymans str. M301315]
ATGATAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTTTGAGCTCCATCGCCGCTGCCGGCATTATCATCGAGCGTCTGTGGACGCTGCGTGCCAGCCGTATCACGCCGC
CGCATCTGCTCGGACAGGTCTGGCAGTGGATCCAGGAAAAGAAGCTCGACGGCGAAAAGCTCAAGCAACTGCGCGCCGAC
TCGCCTCTGGGTGAAATTCTCGCCGCAGGTCTGGCCAATTCCAGGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGA
AGCCGCCGCCCGGGTTATCCATGAACTGGAGCGCTACCTGAGCGCGCTGGGTTCGATTGCCGCCATGGCACCGCTGCTTG
GCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCGGCTCGTTCAACAGTTCGGGGGCCACGGCCAATGCCGGTGTG
CTCGCCGGTGGTATCTCCAAGGCGCTGATCTGTACCGCGTCGGGCCTTATCGTGGCTATTCCGGCAATCTTCTTTCATCG
CTTTCTGCAAAGTCGCGTCGATGAGCTGGTGGTCGGCATGGAGCAGCAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAAAATCGATCTCAAGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.571

88.235

0.693

Multiple sequence alignment