Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PB01_RS18020 Genome accession   NZ_CP031223
Coordinates   3822709..3823659 (-) Length   316 a.a.
NCBI ID   WP_151701451.1    Uniprot ID   -
Organism   Psychrobacillus glaciei strain PB01     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3817709..3828659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PB01_RS17995 (PB01_18200) - 3818494..3819108 (-) 615 WP_151702110.1 uracil-DNA glycosylase -
  PB01_RS18000 (PB01_18205) - 3819193..3819804 (-) 612 WP_151701447.1 phosphatase PAP2 family protein -
  PB01_RS18005 (PB01_18210) - 3819992..3820987 (-) 996 WP_151701448.1 siderophore ABC transporter substrate-binding protein -
  PB01_RS18010 (PB01_18215) - 3821005..3821766 (-) 762 WP_151701449.1 ABC transporter ATP-binding protein -
  PB01_RS18015 (PB01_18220) - 3821763..3822716 (-) 954 WP_151701450.1 iron chelate uptake ABC transporter family permease subunit -
  PB01_RS18020 (PB01_18225) ceuB 3822709..3823659 (-) 951 WP_151701451.1 ABC transporter permease Machinery gene
  PB01_RS18025 (PB01_18230) - 3823919..3824770 (-) 852 WP_151701452.1 DUF6612 family protein -
  PB01_RS18030 (PB01_18235) - 3824844..3826331 (-) 1488 WP_151701453.1 peptide MFS transporter -
  PB01_RS18035 (PB01_18240) - 3826751..3828469 (+) 1719 WP_151701454.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34812.16 Da        Isoelectric Point: 10.4482

>NTDB_id=304211 PB01_RS18020 WP_151701451.1 3822709..3823659(-) (ceuB) [Psychrobacillus glaciei strain PB01]
MKKRYLVIALVALSLLSLFVGVTRISPIDLLDFTSQNTQIFLISRIPRLIAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGILISMIVFTNATYMQKLTFAFIFALAGTLLFMQILNRIKFKDAIFIPLVGLMFGNILSSITTFFAYKSNIV
QNITVWLQGDFSLILKGRYELLYISVPVLIIAYFYANRFTVAGMGEDFAKNLGLSYKRVMNLGLVLVALISTTVVLTVGM
IPFLGLIIPNIVSIFKGDHLEKTLPHTALLGVIFLLVCDILGRVLIFPYEIPISMTVGVIGSAIFLFLLFRGKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=304211 PB01_RS18020 WP_151701451.1 3822709..3823659(-) (ceuB) [Psychrobacillus glaciei strain PB01]
ATGAAAAAAAGATATCTTGTAATTGCACTAGTCGCGCTTTCTCTCTTATCTCTTTTTGTTGGTGTTACGAGAATTTCACC
AATTGATTTGTTAGATTTTACATCTCAAAATACGCAAATATTTCTGATTAGCCGTATACCAAGGCTTATCGCCATCATAC
TTGCAGGAGCAGGGATGAGTATTGCAGGGTTAATCATGCAGAGTTTAAGTAGAAATAAGTTCGTATCTCCAACAACGGCA
GGAACGCTAGATGCTACTCGCTTAGGAATATTAATCTCGATGATCGTATTTACAAATGCGACCTATATGCAGAAGCTCAC
TTTTGCATTTATCTTCGCTTTAGCTGGTACATTGCTGTTTATGCAAATACTTAATCGAATAAAGTTTAAAGATGCCATCT
TTATTCCACTTGTTGGTCTAATGTTCGGAAACATTTTGTCTTCGATAACAACATTTTTTGCTTACAAATCAAACATTGTT
CAAAATATTACTGTCTGGCTACAAGGGGACTTTTCCTTGATCTTGAAAGGCAGATATGAATTATTGTACATAAGTGTACC
TGTATTAATAATTGCCTATTTTTATGCTAATCGTTTTACTGTTGCTGGGATGGGTGAGGATTTTGCAAAAAATCTTGGTT
TATCTTACAAAAGAGTTATGAACTTAGGTTTGGTATTAGTCGCTTTAATCTCAACTACGGTTGTTCTAACAGTTGGGATG
ATCCCGTTTTTAGGTTTAATCATTCCTAATATTGTATCGATATTTAAAGGGGATCATTTAGAAAAAACACTACCACATAC
GGCATTGCTTGGAGTCATATTCTTGTTGGTATGTGACATTTTAGGACGGGTGCTAATTTTCCCTTACGAAATTCCGATTA
GCATGACAGTTGGTGTAATCGGAAGTGCCATCTTCCTATTCCTATTGTTTAGGGGGAAAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.313

99.051

0.538

Multiple sequence alignment