Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PB01_RS11410 Genome accession   NZ_CP031223
Coordinates   2443498..2445201 (-) Length   567 a.a.
NCBI ID   WP_151700312.1    Uniprot ID   A0A5J6SNB7
Organism   Psychrobacillus glaciei strain PB01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2438498..2450201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PB01_RS11390 (PB01_11480) - 2438789..2439505 (-) 717 WP_151700308.1 glycerophosphodiester phosphodiesterase family protein -
  PB01_RS11395 (PB01_11485) - 2439498..2441069 (-) 1572 WP_151700309.1 DUF342 domain-containing protein -
  PB01_RS11400 (PB01_11490) spo0A 2441410..2442201 (-) 792 WP_151700310.1 sporulation transcription factor Spo0A -
  PB01_RS11405 (PB01_11495) - 2442444..2443403 (-) 960 WP_151700311.1 SpoIVB peptidase S55 domain-containing protein -
  PB01_RS11410 (PB01_11500) recN 2443498..2445201 (-) 1704 WP_151700312.1 DNA repair protein RecN Machinery gene
  PB01_RS11415 (PB01_11505) ahrC 2445277..2445726 (-) 450 WP_151700313.1 transcriptional regulator AhrC/ArgR -
  PB01_RS11420 (PB01_11510) - 2445825..2446643 (-) 819 WP_151700314.1 TlyA family RNA methyltransferase -
  PB01_RS11425 (PB01_11515) dxs 2446640..2448535 (-) 1896 WP_151700315.1 1-deoxy-D-xylulose-5-phosphate synthase -
  PB01_RS11430 (PB01_11520) - 2448625..2449509 (-) 885 WP_151700316.1 polyprenyl synthetase family protein -
  PB01_RS11435 (PB01_11525) xseB 2449502..2449723 (-) 222 WP_151700317.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 64216.34 Da        Isoelectric Point: 5.0043

>NTDB_id=304201 PB01_RS11410 WP_151700312.1 2443498..2445201(-) (recN) [Psychrobacillus glaciei strain PB01]
MLKELSIKNFAIIDELTVSFEEGLTVLTGETGAGKSIIIDAVHLLCGGRGSQEFIRHGAKKAELEGLFIITNPKHGVFHK
MIDVGVEIDEESIILRRDINDSGKSVCRVNGKLVTLGILREIGASIIDIHGQHESQELMDEKAHIHLLDQFADEKIRSVK
ESYKELFAKYKKWKKDLATLTENEQQIAHKIDLYTFQVEEINDANLVIGEEEQLQEEKKKLQNFHKVFDKMSSAYEAILS
ESKGLDYIGTAMADLQDISDVDKNMLELSENVSSAFYILQDAAYQLKNELDEMEFDSNQLQYVEDRLACIQTLKRKYGQS
IEAILEYKERIFKSLEQLVNRDEQIQKTADKIKQIEKDLELEANDLTDKRKNAAKQLSKAIMEQLQELYMEKATFSVMFH
EHSKIIYNEYGIDEISFYISTNVGEPPKALTKIASGGELSRMMLALKSIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
SGIATNSQVLCISHLPQVAAMADQHLMIKKEVSGNRTYTILEEVIDDRRAEELSRMMSGAEITSTTLEHSKELLKLAEER
KKILRNA

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=304201 PB01_RS11410 WP_151700312.1 2443498..2445201(-) (recN) [Psychrobacillus glaciei strain PB01]
TTGTTAAAAGAATTATCAATTAAAAACTTTGCCATTATTGATGAATTAACAGTAAGCTTTGAGGAAGGACTTACTGTATT
AACCGGAGAGACAGGTGCAGGTAAATCAATCATAATTGATGCTGTTCATTTGTTGTGTGGAGGAAGAGGCTCTCAAGAGT
TTATTCGACATGGTGCGAAAAAAGCAGAATTAGAAGGATTATTCATCATTACGAACCCAAAGCATGGTGTTTTTCATAAA
ATGATAGATGTTGGTGTTGAAATAGACGAAGAATCTATAATTTTAAGAAGAGATATTAATGATTCAGGGAAGAGTGTATG
TCGCGTAAACGGAAAACTAGTTACGCTTGGTATATTACGAGAAATTGGAGCCTCCATTATTGATATCCATGGGCAGCACG
AGAGCCAAGAACTAATGGATGAAAAGGCACATATTCATTTGCTTGATCAGTTTGCAGACGAAAAGATAAGAAGCGTCAAA
GAGTCTTATAAAGAGCTCTTCGCCAAATATAAAAAGTGGAAAAAAGATTTAGCTACTTTAACGGAAAATGAGCAACAAAT
AGCGCATAAAATAGATTTGTATACTTTTCAAGTGGAAGAAATTAATGATGCAAATTTAGTTATCGGGGAAGAAGAACAAC
TTCAAGAAGAAAAAAAGAAGCTTCAAAATTTCCATAAAGTTTTTGATAAAATGAGCAGTGCATATGAGGCGATCTTATCT
GAATCGAAAGGCTTAGACTACATTGGAACTGCAATGGCAGATTTGCAAGATATCTCTGACGTAGATAAGAATATGTTGGA
GTTAAGTGAAAATGTTTCGTCCGCGTTTTATATTTTGCAAGATGCTGCATATCAGTTGAAAAATGAATTAGATGAAATGG
AATTCGATAGTAATCAGCTTCAATATGTCGAAGACCGTCTTGCATGCATTCAGACACTAAAGAGAAAATATGGACAGTCT
ATCGAAGCTATTTTGGAATACAAAGAGCGAATTTTCAAAAGTCTTGAGCAACTAGTTAATCGAGATGAACAAATTCAAAA
AACAGCAGATAAGATTAAGCAAATAGAGAAAGATTTAGAACTTGAAGCAAATGATTTAACGGATAAACGAAAAAACGCTG
CCAAACAATTAAGCAAAGCAATTATGGAGCAATTACAAGAGCTTTACATGGAAAAAGCAACTTTTTCTGTTATGTTCCAT
GAGCATTCTAAAATAATTTATAACGAGTATGGGATTGACGAAATATCATTTTATATTTCGACGAATGTGGGGGAACCACC
AAAAGCCTTGACAAAAATTGCATCAGGTGGTGAGTTATCTCGCATGATGCTTGCTTTAAAAAGTATTTTCTCAAAGCATC
AAGGGATAACATCGATCATATTTGATGAAGTTGATACTGGTGTTAGTGGACGAGTAGCTCAAGCGATAGCCGAAAAAATA
TCCGGAATTGCAACTAATTCACAAGTTTTATGTATATCACATCTTCCGCAGGTAGCTGCAATGGCAGACCAACATTTAAT
GATTAAAAAAGAAGTATCGGGAAATAGAACATACACCATTTTAGAAGAAGTGATCGATGATCGACGAGCCGAAGAGTTAA
GCCGTATGATGTCAGGTGCTGAAATTACGAGTACTACATTGGAACATTCAAAAGAACTGCTAAAATTAGCGGAAGAACGA
AAAAAAATATTACGAAATGCTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6SNB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.613

100

0.533

Multiple sequence alignment