Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   HYN46_RS03220 Genome accession   NZ_CP031222
Coordinates   716460..718730 (-) Length   756 a.a.
NCBI ID   WP_114898074.1    Uniprot ID   A0A345P3V5
Organism   Aquirhabdus parva strain HYN0046     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 711460..723730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYN46_RS03205 (HYN46_03205) hslO 712575..713456 (-) 882 WP_114900562.1 Hsp33 family molecular chaperone HslO -
  HYN46_RS03210 (HYN46_03210) - 713546..715441 (-) 1896 WP_114898072.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  HYN46_RS03215 (HYN46_03215) - 715762..716445 (+) 684 WP_162818076.1 DUF4230 domain-containing protein -
  HYN46_RS03220 (HYN46_03220) priA 716460..718730 (-) 2271 WP_114898074.1 primosomal protein N' Machinery gene
  HYN46_RS03225 (HYN46_03225) - 718770..719153 (-) 384 WP_114900563.1 RidA family protein -
  HYN46_RS03230 (HYN46_03230) - 719701..721122 (+) 1422 WP_228254873.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HYN46_RS03235 (HYN46_03235) - 721126..722286 (+) 1161 WP_114898075.1 hypothetical protein -
  HYN46_RS03240 (HYN46_03240) - 722283..723104 (+) 822 WP_210009327.1 ABC transporter permease -

Sequence

Protein


Download         Length: 756 a.a.        Molecular weight: 84682.92 Da        Isoelectric Point: 7.9364

>NTDB_id=304163 HYN46_RS03220 WP_114898074.1 716460..718730(-) (priA) [Aquirhabdus parva strain HYN0046]
MSTILVQVAVPVPLFELFDYALPADTQVPTAGCRVRVPFGSRELIGIVMQTRPFNSEENETDESFVTEHKIKSILEVIEF
KPIIPATTLDLLIWAAGYYHYPLGEVLSAALPALLRQGRHLDLLTQYWRVAPDANSAELSRSPKQRKTFDILNLHDQRGA
PESILILMGVERASLLLLEKRGLVESFMQPRELIKHPVNLAHMPLLANPEQQYAIDQIHAVLGRFQGVLLNGLTGSGKTE
VYLQAMQPVLEAGQQVLVLVPEIGLTPQTINRFKARFHAEIVMLHSNMSDVARLQAWQAAYTGHANIVIGTRSAVFTPMP
HLGLIIIDEEHDLSYKQQDTFRYHARDVALKRGFDQKCPVLLGSATPSLESLHLAAEKKLLHLHLNERAGNAEFARIHLI
DLRNKKRENGLSQPLLDAIATRLKADEQVLVFLNRRGFAPVLLCDACGWQADCPRCDAHLTVHYTPRQHLHCHHCGYQSR
LPTECPACKSVNLIPTGAGTARLEETLIGHFPDHPIIRVDRDTTSRVGSWDKIYQRANQTGAAILLGTQMLAKGHHFPNV
TLVAIVDVDGGFLSVDFRAPERMAQLILQVAGRAGRGTKTGQVLIQTRYPENPLLLTLIRQGYGQFAQEMLQDRKSARLP
PYRHAVLIRAESPNAEKTEAFLKAAIHAFKMGIEEYQQQTGQMISTPHDPNGLEIWGPIPAPMEKRAGVFRGHVLIQCAH
RRLLHHLIEPWWPAMMHLPERRGIRASLDVDPMELS

Nucleotide


Download         Length: 2271 bp        

>NTDB_id=304163 HYN46_RS03220 WP_114898074.1 716460..718730(-) (priA) [Aquirhabdus parva strain HYN0046]
ATGAGCACTATTTTGGTGCAGGTTGCAGTACCTGTACCTCTCTTTGAACTTTTTGACTATGCACTTCCTGCTGACACTCA
AGTGCCTACGGCAGGTTGCCGTGTGCGTGTGCCTTTTGGATCACGTGAGCTGATTGGTATCGTGATGCAAACCAGGCCAT
TTAATTCAGAAGAAAATGAAACGGATGAATCCTTCGTTACTGAGCACAAAATAAAATCGATTTTGGAAGTCATCGAGTTC
AAACCGATTATTCCTGCAACGACATTAGACTTACTCATTTGGGCAGCAGGCTATTATCACTATCCTTTAGGAGAAGTCTT
AAGTGCTGCATTACCAGCACTACTCAGGCAAGGGCGCCATCTTGACTTACTCACCCAATATTGGCGTGTAGCACCCGATG
CAAATTCAGCAGAACTATCGCGATCACCAAAGCAACGTAAAACATTCGACATTCTCAATCTCCACGATCAGCGCGGTGCA
CCGGAAAGCATCCTGATTCTGATGGGTGTTGAACGCGCATCATTACTGTTGTTAGAAAAACGCGGTCTGGTCGAATCATT
CATGCAACCGCGGGAACTGATCAAGCATCCAGTGAATCTTGCACACATGCCATTACTTGCCAACCCTGAACAGCAATATG
CAATAGACCAAATTCATGCTGTTTTAGGTAGATTTCAAGGCGTGCTCCTAAATGGGCTGACGGGGAGCGGTAAAACAGAA
GTCTACTTACAGGCCATGCAGCCTGTACTGGAGGCAGGACAACAAGTTCTCGTTCTGGTACCGGAAATTGGCTTAACTCC
GCAAACGATTAATCGTTTTAAAGCACGTTTTCATGCAGAAATCGTCATGTTGCACTCCAATATGAGTGATGTGGCGCGTC
TACAGGCGTGGCAAGCGGCTTATACTGGACACGCCAACATTGTGATCGGAACCCGCTCGGCTGTGTTCACACCAATGCCT
CATTTAGGCTTAATCATCATTGATGAAGAGCATGACCTCTCCTATAAGCAACAGGATACCTTTCGCTATCATGCCCGTGA
TGTCGCTTTAAAGCGCGGATTTGATCAAAAATGTCCAGTCCTGCTGGGCTCAGCAACACCATCTCTTGAAAGTCTCCATC
TGGCTGCTGAAAAGAAGCTGTTGCATTTGCACTTAAACGAAAGAGCTGGAAATGCCGAGTTTGCGCGAATTCACTTAATC
GATTTACGCAATAAAAAAAGAGAGAATGGCCTTAGCCAGCCTCTTTTAGATGCCATAGCAACACGGCTGAAAGCAGATGA
GCAAGTCTTGGTTTTTCTCAATAGGCGGGGGTTTGCACCCGTTTTACTGTGCGATGCCTGTGGTTGGCAAGCGGATTGTC
CACGATGTGATGCGCACTTAACAGTGCACTACACTCCGAGACAGCATTTACATTGCCACCATTGTGGATATCAAAGTCGC
TTGCCAACCGAATGCCCTGCGTGTAAGTCAGTCAATTTGATCCCGACAGGCGCCGGAACTGCAAGGCTTGAAGAGACTTT
AATAGGTCACTTCCCCGATCACCCGATTATTCGCGTAGATCGCGATACAACGAGTCGCGTAGGGAGTTGGGATAAAATAT
ATCAACGCGCCAATCAAACCGGTGCAGCAATCTTACTCGGCACCCAAATGCTGGCCAAAGGACATCACTTCCCGAACGTT
ACCTTAGTAGCCATCGTCGATGTAGATGGTGGTTTTTTAAGTGTGGATTTTCGTGCCCCTGAACGTATGGCACAGTTAAT
CTTACAGGTTGCAGGACGTGCAGGGCGTGGTACTAAAACAGGACAGGTCTTGATTCAGACCCGTTATCCAGAAAATCCTC
TGCTACTGACGCTCATTCGGCAAGGCTATGGGCAGTTTGCCCAAGAGATGCTACAAGATCGAAAATCAGCAAGACTACCG
CCCTATCGACATGCGGTTCTAATTCGGGCGGAATCACCCAATGCTGAAAAAACGGAAGCCTTTCTAAAAGCCGCGATACA
TGCATTTAAAATGGGCATAGAAGAATATCAACAACAAACTGGACAAATGATCTCCACCCCCCACGACCCCAATGGACTCG
AAATTTGGGGTCCTATTCCGGCACCAATGGAGAAGCGGGCGGGCGTTTTTCGGGGTCACGTTTTAATTCAATGTGCACAT
CGTAGATTACTACATCATCTGATCGAACCCTGGTGGCCCGCTATGATGCACCTTCCTGAACGACGAGGCATACGGGCATC
ACTCGATGTTGATCCAATGGAACTGTCCTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(7-112)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(453-480)

DEAD/DEAH box helicase (DEAD)

(210-370)

Primosomal protein N C-terminal domain (PriA_C)

(641-752)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345P3V5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

53.918

99.603

0.537

Multiple sequence alignment