Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CLK_RS05635 Genome accession   NC_010520
Coordinates   1207626..1208579 (+) Length   317 a.a.
NCBI ID   WP_012343576.1    Uniprot ID   A0A846J1C7
Organism   Clostridium botulinum A3 str. Loch Maree     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1202626..1213579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLK_RS05610 (CLK_0487) - 1202747..1202983 (+) 237 WP_003356614.1 SHOCT domain-containing protein -
  CLK_RS05615 (CLK_0488) - 1203253..1203954 (+) 702 WP_012343758.1 response regulator transcription factor -
  CLK_RS05620 (CLK_0489) - 1203954..1205360 (+) 1407 WP_012342869.1 HAMP domain-containing sensor histidine kinase -
  CLK_RS05625 (CLK_0490) - 1205700..1206386 (-) 687 WP_012342174.1 DNA alkylation repair protein -
  CLK_RS05630 (CLK_0491) - 1206622..1207380 (-) 759 WP_012344346.1 AraC family transcriptional regulator -
  CLK_RS05635 (CLK_0492) ceuB 1207626..1208579 (+) 954 WP_012343576.1 ABC transporter permease Machinery gene
  CLK_RS05640 (CLK_0493) - 1208569..1209519 (+) 951 WP_011987958.1 iron chelate uptake ABC transporter family permease subunit -
  CLK_RS05645 (CLK_0494) - 1209516..1210271 (+) 756 WP_012343396.1 ATP-binding cassette domain-containing protein -
  CLK_RS05650 (CLK_0495) - 1210345..1211289 (+) 945 WP_012342021.1 siderophore ABC transporter substrate-binding protein -
  CLK_RS05655 (CLK_0496) - 1211492..1212493 (+) 1002 WP_012344811.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34871.23 Da        Isoelectric Point: 9.9543

>NTDB_id=30415 CLK_RS05635 WP_012343576.1 1207626..1208579(+) (ceuB) [Clostridium botulinum A3 str. Loch Maree]
MKKRYLILALIILSICSIFIGVKDISFIDIFNSDDVKLKVLLISRIPRLISIIVVGVSMSIAGLIMQQISRNKFVSPDTA
STIDSAKLGVLVALMIFPSATLTEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYDLI
QSIASWLQGDFSLIIKGNYELIYFSLPLVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLCSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSIVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=30415 CLK_RS05635 WP_012343576.1 1207626..1208579(+) (ceuB) [Clostridium botulinum A3 str. Loch Maree]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TATAGATATATTTAATTCAGATGATGTGAAGCTTAAGGTATTATTAATTAGTAGAATCCCAAGACTTATAAGTATTATTG
TAGTAGGGGTTAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGAAATAAATTTGTATCTCCAGATACAGCT
TCAACTATAGATAGTGCAAAGCTTGGGGTTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTCTTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGTACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATCT
TCATACCACTCGTAGGTATAATGCTTGGAAATATAATAGATTCAATAACTACGTTTTTTGCGTATAAATATGATCTTATT
CAAAGTATTGCCTCTTGGCTTCAAGGTGATTTTTCTTTAATTATTAAAGGAAATTATGAACTTATATATTTTAGTCTACC
ACTTGTAGTCATAGCCTTTATTTATGCTAACAAATTCACAGTAGCAGGTATGGGAGAAGATTTTTCTAAGAATTTAGGTG
TTAATTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTAGGAAAA
ATACCATTCCTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGGGATAATTTAAAAAATAGTCTTTGTAGTAC
AGCATTGCTTGGAGCAGTATTTCTCTTAGGTTGTGACATATTAGGTAGGTTAGTTATTTATCCCTATGAGATATCTATAG
GACTTGTAGTTGGAGTTATAGGAAGTATAGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A846J1C7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.125

98.107

0.502

Multiple sequence alignment