Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AMYT_RS09185 Genome accession   NZ_CP031219
Coordinates   1869998..1871347 (+) Length   449 a.a.
NCBI ID   WP_114842252.1    Uniprot ID   -
Organism   Malaciobacter mytili LMG 24559     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1864998..1876347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMYT_RS09155 (AMYT_1835) - 1865408..1866388 (+) 981 WP_114842247.1 c-type cytochrome -
  AMYT_RS09160 (AMYT_1836) - 1866403..1866954 (-) 552 WP_114842248.1 YqiA/YcfP family alpha/beta fold hydrolase -
  AMYT_RS09165 (AMYT_1837) - 1866951..1867847 (-) 897 WP_114842249.1 DMT family transporter -
  AMYT_RS09170 (AMYT_1838) - 1867896..1868495 (-) 600 WP_114842250.1 Crp/Fnr family transcriptional regulator -
  AMYT_RS09175 (AMYT_1839) - 1868562..1868924 (-) 363 WP_114842251.1 MmcQ/YjbR family DNA-binding protein -
  AMYT_RS09180 (AMYT_1840) - 1868927..1869865 (-) 939 WP_114843179.1 D-2-hydroxyacid dehydrogenase family protein -
  AMYT_RS09185 (AMYT_1841) radA 1869998..1871347 (+) 1350 WP_114842252.1 DNA repair protein RadA Machinery gene
  AMYT_RS09190 (AMYT_1842) ybeY 1871407..1871826 (+) 420 WP_114842253.1 rRNA maturation RNase YbeY -
  AMYT_RS09195 (AMYT_1843) - 1871829..1872749 (+) 921 WP_114842254.1 calcium/sodium antiporter -
  AMYT_RS09200 (AMYT_1844) - 1872756..1873160 (-) 405 WP_114842255.1 Fur family transcriptional regulator -
  AMYT_RS09205 (AMYT_1845) - 1873359..1873796 (+) 438 WP_114842256.1 DNA starvation/stationary phase protection protein -
  AMYT_RS09210 (AMYT_1846) - 1873878..1874528 (+) 651 WP_114842257.1 ferritin family protein -
  AMYT_RS09215 (AMYT_1847) - 1874556..1876091 (+) 1536 WP_114842258.1 endonuclease/exonuclease/phosphatase family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49244.50 Da        Isoelectric Point: 6.1929

>NTDB_id=304142 AMYT_RS09185 WP_114842252.1 1869998..1871347(+) (radA) [Malaciobacter mytili LMG 24559]
MAKKNKTLFECQHCGEQSTKWLGKCPNCGGWDSFIELNQEQQETLKRTTQLVSTTSKAKPITQIQQDDISRFSSNNSEFD
LVLGGGIVPGSLTLIGGSPGVGKSTLLLKVAGSIASSGKKVLYVSGEESAGQIKLRANRLEANNENLFLLSEIKLEEIMD
EFLRQDYEVAIIDSIQTIYSGTLTSAPGSVSQVREITFELMRKAKDSDIAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GEASREIRMLRGFKNRFGSTSEIGIFEMTNEGLVSAKDIASKFFDRTKAQSGSALTVAMEGSRALILEVQALVTESTYPN
PKRSATGFDVNRLNMLLALLEKKIDLPLNHYDVFVNISGGIKIKESSADLAVIASIISSFRDRPLSKESAFIGEVSLTGE
IKDVYSIDIRLKEAQAQGIKKAICAQKPNTKLDIKVFAVDEVTKMLELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=304142 AMYT_RS09185 WP_114842252.1 1869998..1871347(+) (radA) [Malaciobacter mytili LMG 24559]
ATGGCAAAGAAAAATAAGACTCTTTTTGAATGTCAGCATTGTGGAGAGCAAAGTACAAAATGGCTTGGAAAATGTCCAAA
TTGTGGAGGTTGGGATAGTTTTATAGAATTAAATCAAGAACAACAAGAGACTTTAAAAAGAACTACACAATTAGTTTCAA
CAACTTCAAAAGCAAAACCAATTACTCAAATACAGCAAGATGATATTTCAAGATTTTCTTCAAATAATAGTGAATTTGAT
TTGGTTTTAGGTGGAGGGATTGTTCCTGGAAGCTTAACTTTAATTGGAGGAAGTCCAGGAGTTGGAAAATCAACTTTATT
ATTAAAAGTTGCAGGCTCTATTGCATCAAGTGGTAAAAAAGTATTATATGTTTCAGGAGAAGAGAGTGCTGGACAAATAA
AACTAAGAGCAAATAGACTTGAAGCAAATAATGAAAATCTATTTTTATTAAGTGAAATAAAACTTGAAGAGATAATGGAT
GAATTTTTAAGACAAGATTATGAAGTGGCTATTATAGACTCAATTCAAACTATTTACTCTGGCACATTAACTTCAGCTCC
AGGAAGTGTATCTCAAGTAAGAGAGATAACTTTTGAGCTTATGAGAAAAGCAAAAGATAGTGATATAGCTATGTTTATTA
TTGGACATATTACAAAAGATGGAAGTATTGCAGGTCCAAGAGTATTGGAACATATGGTGGATACTGTTTTATACTTTGAA
GGAGAAGCAAGTAGAGAAATAAGAATGTTAAGAGGCTTTAAAAATAGATTTGGTTCTACTTCTGAAATTGGTATTTTTGA
AATGACAAATGAAGGCTTAGTAAGTGCAAAAGATATAGCTTCTAAATTCTTTGATAGAACAAAAGCACAAAGTGGTTCTG
CTTTAACTGTAGCTATGGAAGGAAGTCGTGCTTTAATTTTAGAAGTTCAAGCTTTAGTTACAGAAAGTACATACCCAAAC
CCAAAAAGAAGTGCAACAGGCTTTGATGTAAATAGATTAAATATGCTTTTAGCACTACTTGAAAAGAAAATTGATTTGCC
ATTAAATCATTATGATGTATTTGTAAATATAAGTGGTGGTATTAAAATAAAAGAGAGTTCTGCTGATTTAGCTGTAATTG
CAAGTATTATAAGCTCTTTTAGAGATAGACCCTTATCAAAAGAATCAGCTTTTATTGGTGAAGTATCTTTAACAGGAGAA
ATAAAAGATGTTTACTCTATTGACATAAGATTAAAAGAAGCACAAGCACAAGGTATAAAAAAAGCAATTTGTGCCCAAAA
ACCAAATACTAAACTTGATATAAAAGTTTTTGCAGTTGATGAAGTTACTAAAATGTTGGAGCTTTTTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-221)

Subunit ChlI of Mg-chelatase (ChlI)

(347-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.124

100

0.486
  radA Streptococcus mitis SK321

46.46

100

0.468
  radA Streptococcus mitis NCTC 12261

46.46

100

0.468
  radA Streptococcus pneumoniae Rx1

46.46

100

0.468
  radA Streptococcus pneumoniae D39

46.46

100

0.468
  radA Streptococcus pneumoniae R6

46.46

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.46

100

0.468

Multiple sequence alignment