Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   AHALO_RS04500 Genome accession   NZ_CP031218
Coordinates   898018..899847 (-) Length   609 a.a.
NCBI ID   WP_101183585.1    Uniprot ID   A0A2N1J5T1
Organism   Malaciobacter halophilus strain CCUG 53805     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 893018..904847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHALO_RS04475 (AHALO_0895) - 893111..894868 (+) 1758 WP_101183581.1 YgiQ family radical SAM protein -
  AHALO_RS04480 (AHALO_0896) - 894952..895521 (+) 570 WP_101183582.1 adenylate kinase -
  AHALO_RS04485 (AHALO_0897) - 895537..896316 (+) 780 WP_191321652.1 competence/damage-inducible protein A -
  AHALO_RS04490 (AHALO_0898) - 896319..896984 (-) 666 WP_101183583.1 tetratricopeptide repeat protein -
  AHALO_RS04495 (AHALO_0899) - 896981..898006 (-) 1026 WP_101183584.1 alanine racemase -
  AHALO_RS04500 (AHALO_0900) uvrC 898018..899847 (-) 1830 WP_101183585.1 excinuclease ABC subunit UvrC Machinery gene
  AHALO_RS04505 (AHALO_0901) - 899901..900806 (-) 906 WP_101183586.1 hypothetical protein -
  AHALO_RS04510 (AHALO_0902) - 900931..902214 (-) 1284 WP_101183587.1 diguanylate cyclase -
  AHALO_RS04515 (AHALO_0903) - 902297..903058 (-) 762 WP_101183588.1 choline/ethanolamine kinase family protein -
  AHALO_RS04520 (AHALO_0904) pnuC 903048..903650 (-) 603 WP_101183589.1 nicotinamide riboside transporter PnuC -
  AHALO_RS04525 (AHALO_0905) - 903770..904048 (+) 279 WP_101183590.1 putative quinol monooxygenase -
  AHALO_RS04530 (AHALO_0906) - 904058..904693 (+) 636 WP_101183591.1 hypothetical protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 71248.68 Da        Isoelectric Point: 9.4729

>NTDB_id=304133 AHALO_RS04500 WP_101183585.1 898018..899847(-) (uvrC) [Malaciobacter halophilus strain CCUG 53805]
MNLEEKLKELPNSAGVYQYFDKDGHLLYIGKAKVLKNRVKSYFKFTPTLAPADKLSPRIYKMITEVKSLEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIIIDYKEDFPRLEITRKVLKDKNIKYFGPYSTGARDMLDSIYEIVPLVQKKSC
VKSKEACLFHQIKKCHAPCVGKITKEEYSKIVEEALEFIYNKNRLIKKLNEKMLQYSEEFRFEEAMKLRDRIKTIEKSQI
HTGMDLASNIDLDLFAIRASKDKAVIVRMFFREGKLASSNHDYLKINQTQLEIDLNEAYKRAIINYYDNEIPLLPKEIIV
ADEITQEIDELQEFIKDRFEKNIPITHPKRGKKTEIIKVAINNCNELLRLQTTNSSIYEELKQLLNLSYTPSRFECYDNS
HMMGQATVGAMVTWEEKFVKKDYRHYNLEAKDEYAQMKETLIRRVQSFEKNPAPDVWVIDGGETLLKLAIDIRNSVGVNL
DIIAIAKEKLDFKAHRAKGSAKDIIYFEQNNSIKRVDLLPSDKRLQFIQRLRDEAHRFAISFHKKQKRKEDSKISLLQIK
GIGEAKVKKLLLYFGEFEKIRNASFDELKAVLNEKDASLLITHFKTLEN

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=304133 AHALO_RS04500 WP_101183585.1 898018..899847(-) (uvrC) [Malaciobacter halophilus strain CCUG 53805]
ATGAATTTAGAAGAAAAACTTAAAGAACTACCAAATAGTGCCGGAGTTTATCAATACTTTGATAAAGATGGACATTTATT
ATACATAGGCAAAGCAAAAGTGCTTAAAAATAGAGTAAAGTCATACTTTAAATTTACTCCTACTTTAGCCCCTGCTGATA
AATTAAGTCCAAGAATATACAAAATGATAACAGAGGTTAAGTCTTTAGAGTGGATTGTAGTGCCAAATGAACATGATGCA
CTTATTCTAGAAAATTCACTTATTAAACAACTTAAACCTAAATATAATATTCTTTTAAGAGATGATAAAACTTATCCATA
TATTATAATAGATTATAAAGAGGATTTTCCAAGACTTGAAATTACAAGAAAAGTTCTAAAAGATAAAAATATTAAATATT
TTGGCCCTTACTCAACAGGAGCTAGAGATATGCTAGATAGCATCTATGAAATAGTACCTCTTGTTCAAAAAAAGTCTTGT
GTAAAAAGTAAAGAGGCCTGTTTATTTCATCAAATAAAAAAATGTCATGCTCCTTGTGTAGGAAAAATTACAAAAGAAGA
GTATAGTAAAATTGTTGAAGAAGCATTAGAGTTTATATACAACAAAAATCGACTTATAAAAAAACTAAATGAAAAAATGC
TTCAATACTCTGAAGAGTTTCGTTTTGAAGAGGCTATGAAGTTAAGAGATAGAATCAAAACAATAGAAAAATCTCAAATT
CATACAGGAATGGATTTAGCTTCAAATATTGACCTTGATTTATTTGCTATAAGAGCGTCAAAAGATAAAGCAGTTATTGT
AAGAATGTTTTTTAGAGAAGGAAAATTAGCTTCAAGTAATCATGACTACTTAAAAATAAATCAAACTCAATTGGAAATAG
ATTTAAATGAAGCCTATAAAAGAGCAATTATAAACTATTATGATAATGAAATTCCGTTACTTCCTAAAGAGATTATAGTA
GCAGATGAGATAACACAAGAGATTGATGAATTGCAAGAATTTATTAAAGATAGATTTGAAAAAAATATTCCAATAACACA
TCCAAAAAGAGGGAAAAAAACAGAAATTATAAAAGTTGCAATAAATAATTGTAATGAATTATTAAGATTACAAACAACAA
ATAGTTCTATTTATGAAGAGTTAAAACAGTTACTAAATCTTTCTTATACTCCAAGTAGATTTGAATGTTATGATAATTCA
CATATGATGGGACAAGCAACTGTGGGTGCGATGGTTACATGGGAAGAGAAATTTGTAAAAAAAGATTATAGGCACTATAA
TTTAGAAGCTAAAGATGAATATGCACAAATGAAAGAGACTCTAATAAGAAGAGTTCAAAGTTTTGAAAAAAATCCAGCAC
CAGATGTTTGGGTAATTGATGGAGGAGAAACTTTATTAAAACTTGCAATTGATATAAGAAACTCAGTTGGAGTAAATCTT
GATATTATTGCTATTGCAAAGGAAAAACTTGATTTTAAAGCTCATAGAGCAAAAGGAAGTGCAAAAGATATTATTTATTT
TGAACAAAACAACTCAATAAAAAGAGTTGATTTACTTCCTAGTGATAAAAGACTGCAATTTATTCAAAGGTTAAGAGATG
AAGCACATAGATTTGCAATAAGCTTTCATAAAAAACAAAAAAGAAAAGAAGATAGTAAAATCTCTTTACTTCAAATAAAA
GGAATAGGAGAAGCTAAAGTTAAAAAGCTTCTATTATATTTTGGTGAATTTGAGAAAATAAGAAATGCATCCTTTGATGA
ATTAAAAGCAGTTCTAAACGAAAAAGATGCTAGTTTATTAATAACTCATTTTAAAACATTAGAAAATTAA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-540)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N1J5T1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.839

98.194

0.509

Multiple sequence alignment