Detailed information
Bioinformatically predicted
Overview
| Name | dprB | Type | Machinery gene |
| Locus tag | ABIV_RS12040 | Genome accession | NZ_CP031217 |
| Coordinates | 2373520..2373900 (+) | Length | 126 a.a. |
| NCBI ID | WP_114840124.1 | Uniprot ID | A0AAX2AAF0 |
| Organism | Halarcobacter bivalviorum strain LMG 26154 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2368520..2378900
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABIV_RS12010 (ABIV_2356) | gatC | 2368718..2369008 (+) | 291 | WP_114840118.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC | - |
| ABIV_RS12015 (ABIV_2357) | - | 2369024..2369365 (+) | 342 | WP_114840119.1 | arsenate reductase family protein | - |
| ABIV_RS12020 (ABIV_2358) | - | 2369379..2370161 (-) | 783 | WP_114840120.1 | hypothetical protein | - |
| ABIV_RS12025 (ABIV_2359) | - | 2370252..2371607 (-) | 1356 | WP_205526985.1 | class II 3-deoxy-7-phosphoheptulonate synthase | - |
| ABIV_RS12030 (ABIV_2360) | - | 2371702..2372703 (-) | 1002 | WP_114840122.1 | transaldolase | - |
| ABIV_RS12035 (ABIV_2361) | serB | 2372833..2373453 (-) | 621 | WP_114840123.1 | phosphoserine phosphatase SerB | - |
| ABIV_RS12040 (ABIV_2362) | dprB | 2373520..2373900 (+) | 381 | WP_114840124.1 | Holliday junction resolvase RuvX | Machinery gene |
| ABIV_RS12045 (ABIV_2363) | nrtS | 2373950..2374342 (+) | 393 | WP_114840125.1 | nitrate/nitrite transporter NrtS | - |
| ABIV_RS12050 (ABIV_2364) | - | 2374324..2375187 (+) | 864 | WP_114840126.1 | methyl-accepting chemotaxis protein | - |
| ABIV_RS13810 (ABIV_2365) | - | 2375210..2376337 (-) | 1128 | WP_162918017.1 | HD domain-containing phosphohydrolase | - |
| ABIV_RS12060 (ABIV_2366) | acpS | 2376315..2376665 (-) | 351 | WP_114840128.1 | holo-ACP synthase | - |
| ABIV_RS12065 (ABIV_2367) | - | 2376696..2377655 (+) | 960 | WP_114840129.1 | ABC transporter permease | - |
| ABIV_RS12070 (ABIV_2368) | panC | 2377675..2378496 (+) | 822 | WP_114840130.1 | pantoate--beta-alanine ligase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 14334.79 Da Isoelectric Point: 8.4919
>NTDB_id=304129 ABIV_RS12040 WP_114840124.1 2373520..2373900(+) (dprB) [Halarcobacter bivalviorum strain LMG 26154]
MKLACIDIGLKRIGVAICLQGDIVTPLPAILRKNRNQASNDVLKTLKEWEIEKLVVGFPSASEDMQKRVKHFVTLLDFDK
EITFQEENMSSIEAQDLMKGNIKYKRDGRVDSLAAKIILERYLVNT
MKLACIDIGLKRIGVAICLQGDIVTPLPAILRKNRNQASNDVLKTLKEWEIEKLVVGFPSASEDMQKRVKHFVTLLDFDK
EITFQEENMSSIEAQDLMKGNIKYKRDGRVDSLAAKIILERYLVNT
Nucleotide
Download Length: 381 bp
>NTDB_id=304129 ABIV_RS12040 WP_114840124.1 2373520..2373900(+) (dprB) [Halarcobacter bivalviorum strain LMG 26154]
TTGAAACTAGCTTGCATTGATATTGGTTTAAAAAGAATTGGAGTTGCAATTTGTCTTCAAGGTGACATAGTTACGCCTCT
TCCAGCTATTTTAAGAAAAAATAGAAACCAAGCTTCAAATGATGTTTTAAAGACTTTAAAAGAGTGGGAAATTGAGAAGC
TAGTTGTAGGATTTCCAAGTGCAAGTGAAGATATGCAAAAAAGAGTAAAACATTTTGTAACACTACTTGATTTTGACAAA
GAAATTACCTTTCAAGAAGAAAATATGAGTTCTATTGAAGCCCAAGATTTAATGAAAGGTAATATCAAATATAAAAGAGA
TGGAAGAGTAGATTCTCTTGCTGCAAAAATTATTTTAGAAAGATATTTAGTAAACACTTAG
TTGAAACTAGCTTGCATTGATATTGGTTTAAAAAGAATTGGAGTTGCAATTTGTCTTCAAGGTGACATAGTTACGCCTCT
TCCAGCTATTTTAAGAAAAAATAGAAACCAAGCTTCAAATGATGTTTTAAAGACTTTAAAAGAGTGGGAAATTGAGAAGC
TAGTTGTAGGATTTCCAAGTGCAAGTGAAGATATGCAAAAAAGAGTAAAACATTTTGTAACACTACTTGATTTTGACAAA
GAAATTACCTTTCAAGAAGAAAATATGAGTTCTATTGAAGCCCAAGATTTAATGAAAGGTAATATCAAATATAAAAGAGA
TGGAAGAGTAGATTCTCTTGCTGCAAAAATTATTTTAGAAAGATATTTAGTAAACACTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprB | Helicobacter pylori 26695 |
52.344 |
100 |
0.532 |