Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EB814_RS22955 Genome accession   NZ_CP035545
Coordinates   4570188..4570856 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain FSIS11705876     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4565188..4575856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EB814_RS22925 (EB814_23665) rfaQ 4565366..4566424 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  EB814_RS22930 (EB814_23670) waaA 4566837..4568114 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  EB814_RS22935 (EB814_23675) coaD 4568122..4568601 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  EB814_RS22940 (EB814_23680) mutM 4568640..4569449 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  EB814_RS22945 (EB814_23685) rpmG 4569547..4569714 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  EB814_RS22950 (EB814_23690) rpmB 4569735..4569971 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  EB814_RS22955 (EB814_23695) radC 4570188..4570856 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  EB814_RS22960 (EB814_23700) coaBC 4571028..4572248 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EB814_RS22965 (EB814_23705) dut 4572226..4572684 (+) 459 WP_000976070.1 dUTP diphosphatase -
  EB814_RS22970 (EB814_23710) slmA 4572791..4573387 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  EB814_RS22975 (EB814_23715) pyrE 4573424..4574065 (-) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  EB814_RS22980 (EB814_23720) rph 4574131..4574847 (-) 717 WP_001247093.1 ribonuclease PH -
  EB814_RS22985 (EB814_23725) yicC 4574974..4575837 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=304096 EB814_RS22955 WP_001297375.1 4570188..4570856(-) (radC) [Escherichia coli strain FSIS11705876]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=304096 EB814_RS22955 WP_001297375.1 4570188..4570856(-) (radC) [Escherichia coli strain FSIS11705876]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACTGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGACGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496