Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EB814_RS18030 Genome accession   NZ_CP035545
Coordinates   3552628..3553143 (-) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli strain FSIS11705876     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3547628..3558143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EB814_RS18005 (EB814_18630) ygaZ 3548027..3548764 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  EB814_RS18010 (EB814_18635) ygaH 3548754..3549089 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  EB814_RS18015 (EB814_18640) emrR 3549180..3549710 (+) 531 WP_000378437.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EB814_RS18020 (EB814_18645) emrA 3549837..3551009 (+) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EB814_RS18025 (EB814_18650) emrB 3551026..3552564 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  EB814_RS18030 (EB814_18655) luxS 3552628..3553143 (-) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  EB814_RS18035 (EB814_18660) gshA 3553293..3554849 (-) 1557 WP_000611787.1 glutamate--cysteine ligase -
  EB814_RS18040 (EB814_18665) yqaA 3554922..3555350 (-) 429 WP_001287450.1 YqaA family protein -
  EB814_RS18045 (EB814_18670) yqaB 3555347..3555913 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EB814_RS18075 (EB814_18700) csrA 3557141..3557326 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=304076 EB814_RS18030 WP_001130215.1 3552628..3553143(-) (luxS) [Escherichia coli strain FSIS11705876]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=304076 EB814_RS18030 WP_001130215.1 3552628..3553143(-) (luxS) [Escherichia coli strain FSIS11705876]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725