Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EB814_RS13160 Genome accession   NZ_CP035545
Coordinates   2612443..2612919 (+) Length   158 a.a.
NCBI ID   WP_001186192.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli strain FSIS11705876     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2607443..2617919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EB814_RS13130 (EB814_13600) - 2607608..2608513 (+) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -
  EB814_RS13135 (EB814_13605) - 2608510..2609580 (+) 1071 WP_000102660.1 patatin-like phospholipase family protein -
  EB814_RS13140 (EB814_13610) - 2609716..2610399 (+) 684 WP_000775497.1 hypothetical protein -
  EB814_RS13145 (EB814_13615) - 2610415..2610825 (+) 411 WP_000846711.1 hypothetical protein -
  EB814_RS13150 (EB814_13625) - 2611046..2611867 (+) 822 WP_001234544.1 DUF932 domain-containing protein -
  EB814_RS13155 (EB814_13630) - 2611949..2612428 (+) 480 WP_000860080.1 antirestriction protein -
  EB814_RS13160 (EB814_13635) radC 2612443..2612919 (+) 477 WP_001186192.1 RadC family protein Machinery gene
  EB814_RS13165 (EB814_13640) yeeT 2612982..2613203 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  EB814_RS13170 (EB814_13645) cbeA 2613277..2613645 (+) 369 WP_001285587.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  EB814_RS13175 (EB814_13650) cbtA 2613734..2614107 (+) 374 Protein_2610 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  EB814_RS13180 (EB814_13655) yeeW 2614104..2614298 (+) 195 WP_000988600.1 DUF5983 family protein -
  EB814_RS13185 (EB814_13660) - 2614344..2614424 (+) 81 Protein_2612 hypothetical protein -
  EB814_RS28230 (EB814_13665) - 2614713..2614820 (-) 108 WP_074147515.1 transposase domain-containing protein -
  EB814_RS28585 - 2614772..2615095 (+) 324 WP_269447326.1 EutP/PduV family microcompartment system protein -
  EB814_RS13200 (EB814_13675) tmaR 2615196..2615525 (-) 330 WP_000450409.1 DUF496 family protein -
  EB814_RS13205 (EB814_13680) yeeA 2615697..2616755 (-) 1059 WP_001202488.1 FUSC family protein -
  EB814_RS13210 (EB814_13685) sbmC 2616954..2617427 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=304066 EB814_RS13160 WP_001186192.1 2612443..2612919(+) (radC) [Escherichia coli strain FSIS11705876]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=304066 EB814_RS13160 WP_001186192.1 2612443..2612919(+) (radC) [Escherichia coli strain FSIS11705876]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392