Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | EB814_RS06540 | Genome accession | NZ_CP035545 |
| Coordinates | 1397102..1397578 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186738.1 | Uniprot ID | B7UP40 |
| Organism | Escherichia coli strain FSIS11705876 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1392102..1402578
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EB814_RS06520 (EB814_06785) | - | 1393380..1394285 (+) | 906 | WP_000203541.1 | diguanylate cyclase regulator RdcB family protein | - |
| EB814_RS06525 (EB814_06790) | - | 1394282..1395352 (+) | 1071 | WP_000102669.1 | patatin-like phospholipase family protein | - |
| EB814_RS06530 (EB814_06800) | - | 1395692..1396510 (+) | 819 | WP_001234682.1 | DUF932 domain-containing protein | - |
| EB814_RS06535 (EB814_06805) | - | 1396601..1397086 (+) | 486 | WP_000214398.1 | antirestriction protein | - |
| EB814_RS06540 (EB814_06810) | radC | 1397102..1397578 (+) | 477 | WP_001186738.1 | RadC family protein | Machinery gene |
| EB814_RS06545 (EB814_06815) | - | 1397641..1397862 (+) | 222 | WP_001220314.1 | DUF987 domain-containing protein | - |
| EB814_RS06550 (EB814_06820) | - | 1398025..1398399 (+) | 375 | WP_001280954.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| EB814_RS06555 (EB814_06825) | - | 1398446..1398820 (+) | 375 | WP_000854914.1 | TA system toxin CbtA family protein | - |
| EB814_RS06560 (EB814_06830) | - | 1398817..1399308 (+) | 492 | WP_000976853.1 | DUF5983 family protein | - |
| EB814_RS06565 (EB814_06835) | - | 1399320..1399517 (+) | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| EB814_RS06570 (EB814_06840) | - | 1399602..1400444 (+) | 843 | WP_001280481.1 | DUF4942 domain-containing protein | - |
| EB814_RS06580 (EB814_06850) | ghrA | 1400915..1401853 (+) | 939 | WP_000351284.1 | glyoxylate/hydroxypyruvate reductase GhrA | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17673.28 Da Isoelectric Point: 6.9242
>NTDB_id=304054 EB814_RS06540 WP_001186738.1 1397102..1397578(+) (radC) [Escherichia coli strain FSIS11705876]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=304054 EB814_RS06540 WP_001186738.1 1397102..1397578(+) (radC) [Escherichia coli strain FSIS11705876]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
71.519 |
0.392 |