Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   UCCLBBS449_RS05290 Genome accession   NZ_CP031198
Coordinates   1089495..1091300 (+) Length   601 a.a.
NCBI ID   WP_042522162.1    Uniprot ID   -
Organism   Levilactobacillus brevis strain UCCLBBS449     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1084495..1096300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UCCLBBS449_RS05265 (UCCLBBS449_1011) - 1084684..1085418 (+) 735 WP_042522165.1 ABC transporter ATP-binding protein -
  UCCLBBS449_RS05270 (UCCLBBS449_1012) - 1085415..1086641 (+) 1227 WP_042522164.1 ABC transporter permease -
  UCCLBBS449_RS05275 (UCCLBBS449_1013) - 1086703..1087494 (+) 792 WP_011668204.1 phosphotransferase family protein -
  UCCLBBS449_RS05280 (UCCLBBS449_1014) trmB 1087560..1088207 (+) 648 WP_015473913.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  UCCLBBS449_RS05285 (UCCLBBS449_1015) - 1088334..1089428 (+) 1095 WP_042522163.1 competence protein CoiA -
  UCCLBBS449_RS05290 (UCCLBBS449_1016) pepF 1089495..1091300 (+) 1806 WP_042522162.1 oligoendopeptidase F Regulator
  UCCLBBS449_RS05295 (UCCLBBS449_1017) - 1091356..1092220 (-) 865 Protein_1014 DegV family protein -
  UCCLBBS449_RS05300 (UCCLBBS449_1018) - 1092383..1093021 (-) 639 WP_024526733.1 ClpXP adapter SpxH family protein -
  UCCLBBS449_RS05305 (UCCLBBS449_1019) - 1093335..1093994 (+) 660 WP_011668198.1 GTP pyrophosphokinase family protein -
  UCCLBBS449_RS05310 (UCCLBBS449_1020) - 1093996..1094799 (+) 804 WP_021740943.1 NAD kinase -
  UCCLBBS449_RS05315 (UCCLBBS449_1021) - 1094796..1095695 (+) 900 WP_075168585.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 67091.09 Da        Isoelectric Point: 4.8246

>NTDB_id=304043 UCCLBBS449_RS05290 WP_042522162.1 1089495..1091300(+) (pepF) [Levilactobacillus brevis strain UCCLBBS449]
MKQIPKRSEVPTALTWDLTTIFPDEAAFKTAIAAIKAQTTVVAGLKGQLAQSGAALYRVTTAVFDLNRQLERVYVYASLN
NDQDTGNAAAQALMGQAESLVATVGAATAWFEPEVLALSADQLQTLIDNDPRLADYQHVFDVLGQQRAHTLSVAEEKLLA
GASDIFGASAKTYSVLSDADLKFPVVQDEAGNDVRLSEGLYGVLLQSTTPRVRQQAFEALYSVYQQFRHTFAATLASEVK
THNFSAETRHYASARAAAMSRNNVPAVVYDTLVETVNDHLDSLHRYVNLRKEILALPQLHMYDLYTPITGEPSLKYTYQE
AQEMALKALAVLGPDYTANVQKMFDGRAIDVVENQGKRTGAYSGGMYDTKPYILLNWQDSLESLFTLVHEMGHSMHSHYT
RTNQPYQYGDYSIFVAEIASTTNENLLTDYLLKTQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEDYIHQQDAAGETLT
ADFMSDFYGKLNQRYYGDGVISDPQIADEWTRIPHFYYDYYVYQYATGFAAATTLSQRILSGDEAKRDAYLAYLKAGSSA
LPLDVMKQAGVDMTQPGYLQTAFATFDERLAEFTQLAHELN

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=304043 UCCLBBS449_RS05290 WP_042522162.1 1089495..1091300(+) (pepF) [Levilactobacillus brevis strain UCCLBBS449]
GTGAAACAAATTCCGAAACGATCAGAGGTTCCCACGGCACTGACTTGGGACCTGACAACTATTTTTCCCGACGAGGCAGC
TTTTAAGACCGCAATTGCCGCGATTAAAGCGCAAACAACGGTTGTGGCCGGCTTGAAGGGACAATTGGCCCAAAGTGGGG
CCGCGTTATATCGTGTCACGACGGCGGTATTTGATTTGAATCGCCAGTTGGAGCGGGTATACGTCTATGCGTCTTTAAAC
AATGATCAGGATACCGGCAATGCTGCGGCCCAAGCATTAATGGGGCAGGCCGAGAGCTTGGTGGCAACTGTGGGTGCCGC
CACGGCTTGGTTTGAACCTGAGGTATTGGCTCTGTCAGCGGATCAGCTGCAAACGCTGATTGATAACGACCCCCGGCTGG
CAGATTATCAACATGTGTTTGACGTATTGGGCCAGCAGCGGGCACATACGCTGTCAGTGGCGGAGGAAAAATTGTTAGCG
GGGGCTAGTGATATCTTTGGTGCGTCTGCTAAAACTTATAGTGTGCTGAGCGATGCTGATCTAAAGTTTCCGGTTGTTCA
AGATGAGGCCGGCAACGATGTGCGACTGTCAGAAGGACTGTATGGTGTTTTGCTACAATCCACAACACCACGGGTGCGGC
AGCAGGCCTTTGAAGCATTATATTCGGTTTATCAACAATTCCGACATACCTTTGCTGCAACCTTGGCGAGTGAAGTCAAA
ACGCATAATTTTAGCGCTGAGACGCGTCACTATGCGAGTGCCAGAGCGGCCGCAATGAGTCGCAATAATGTGCCAGCAGT
GGTCTATGATACCTTGGTAGAAACAGTCAATGATCATTTAGACTCGTTGCATCGCTATGTTAATTTGCGCAAAGAGATTT
TGGCCTTGCCGCAACTGCACATGTACGACCTGTATACGCCAATTACGGGTGAACCCAGCTTGAAATATACCTACCAAGAA
GCACAAGAGATGGCGTTAAAGGCACTAGCAGTTTTGGGACCGGATTACACTGCCAATGTTCAAAAGATGTTTGATGGTCG
GGCAATTGATGTGGTTGAAAATCAGGGTAAGCGGACGGGCGCTTACTCAGGCGGGATGTATGATACCAAACCGTATATTT
TGTTGAATTGGCAAGATAGCTTGGAAAGCTTGTTCACGTTGGTTCATGAGATGGGACACAGCATGCATAGCCATTACACT
CGGACAAATCAACCGTACCAGTATGGTGATTATTCAATCTTTGTTGCGGAAATTGCCTCGACAACGAATGAAAACTTGCT
GACGGACTACCTGTTGAAAACCCAGACTGACCCCAAGGTGCGAGCTTATGTATTAAACCATTATCTGGATGGCTTTAAAG
GCACGGTATACCGCCAGACGCAGTTCGCAGAATTTGAGGACTACATTCACCAACAGGATGCCGCTGGCGAAACTCTGACG
GCTGACTTCATGAGTGATTTCTACGGCAAACTTAATCAGCGTTATTACGGTGATGGGGTGATTTCCGATCCACAAATCGC
TGATGAATGGACCCGAATTCCACATTTCTACTATGACTACTATGTGTACCAGTACGCAACCGGGTTTGCGGCGGCCACGA
CGTTATCGCAACGAATTTTGAGTGGCGACGAGGCAAAGCGGGATGCCTACTTGGCCTATCTAAAGGCAGGAAGTTCTGCC
TTACCACTTGATGTGATGAAACAAGCGGGCGTCGATATGACGCAACCGGGCTATTTGCAGACGGCCTTTGCAACGTTCGA
CGAGCGTTTGGCAGAATTCACGCAATTGGCGCATGAATTAAACTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-183)

Peptidase family M3 (Peptidase_M3)

(204-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50

98.17

0.491

Multiple sequence alignment