Detailed information NTG0304038

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: U14A_RS24500
• Genome accession: NZ_CP035516
• Coordinates: 4921397..4921873 (+)
• Length: 158 a.a.
• NCBI ID: WP_001186775.1
• Uniprot ID: A7ZVJ5
• Organism: Escherichia coli strain U14A
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4916397..4926873

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U14A_RS24460 (U14A_04720)	-	4916849..4917044 (+)	196	Protein_4721	DUF905 family protein	-
U14A_RS24470 (U14A_04721)	-	4917162..4917362 (+)	201	Protein_4722	DUF945 domain-containing protein	-
U14A_RS24475 (U14A_04722)	istB	4917448..4918194 (-)	747	WP_001016257.1	IS21-like element ISEc12 family helper ATPase IstB	-
U14A_RS24480 (U14A_04723)	istA	4918209..4919750 (-)	1542	WP_001298859.1	IS21-like element ISEc12 family transposase	-
U14A_RS24485 (U14A_04724)	-	4919946..4920566 (+)	621	Protein_4725	DUF932 domain-containing protein	-
U14A_RS24495 (U14A_04725)	-	4920908..4921381 (+)	474	WP_001350782.1	antirestriction protein	-
U14A_RS24500 (U14A_04726)	radC	4921397..4921873 (+)	477	WP_001186775.1	RadC family protein	Machinery gene
U14A_RS24505 (U14A_04727)	-	4921936..4922157 (+)	222	WP_000692345.1	DUF987 domain-containing protein	-
U14A_RS24510 (U14A_04729)	-	4922320..4922688 (+)	369	WP_001295723.1	type IV toxin-antitoxin system YeeU family antitoxin	-
U14A_RS24515 (U14A_04730)	-	4922778..4923155 (+)	378	WP_000854759.1	TA system toxin CbtA family protein	-
U14A_RS27615	-	4923152..4923250 (+)	99	Protein_4731	DUF5983 family protein	-
U14A_RS24520 (U14A_04732)	-	4923337..4923762 (+)	426	WP_000422741.1	transposase	-
U14A_RS24525 (U14A_04733)	tnpB	4923759..4924109 (+)	351	WP_000624722.1	IS66 family insertion sequence element accessory protein TnpB	-
U14A_RS24530 (U14A_04734)	-	4924350..4925526 (+)	1177	Protein_4734	IS66-like element ISEc23 family transposase	-
U14A_RS27915	-	4925557..4925742 (+)	186	WP_000464960.1	transposase domain-containing protein	-
U14A_RS24535 (U14A_04736)	-	4925774..4926169 (+)	396	Protein_4736	DUF5983 family protein	-
U14A_RS24540 (U14A_04737)	-	4926186..4926362 (+)	177	WP_000839286.1	DUF957 domain-containing protein	-
U14A_RS27005 (U14A_04738)	-	4926468..4926617 (+)	150	Protein_4738	hypothetical protein	-
U14A_RS27920	-	4926587..4926721 (+)	135	Protein_4739	transcriptional regulator	-

Sequence

Protein

• Length: 158 a.a.
• Molecular weight: 17687.30 Da
• Isoelectric Point: 7.1437

>NTDB_id=304038 U14A_RS24500 WP_001186775.1 4921397..4921873(+) (radC) [Escherichia coli strain U14A]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide

• Length: 477 bp

>NTDB_id=304038 U14A_RS24500 WP_001186775.1 4921397..4921873(+) (radC) [Escherichia coli strain U14A]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (38-156)

3D structure

• AlphaFold DB: A7ZVJ5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	55.752	71.519	0.399