Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   DV527_RS04365 Genome accession   NZ_CP031196
Coordinates   913351..914067 (-) Length   238 a.a.
NCBI ID   WP_002482781.1    Uniprot ID   A0A380HJP0
Organism   Staphylococcus saprophyticus strain 1A     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 908351..919067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV527_RS04345 (DV527_04355) - 909416..909640 (+) 225 WP_002482777.1 sulfurtransferase TusA family protein -
  DV527_RS04350 (DV527_04360) - 909786..910739 (+) 954 WP_002482778.1 LacI family DNA-binding transcriptional regulator -
  DV527_RS04355 (DV527_04365) - 910825..912309 (+) 1485 WP_041079874.1 sucrose-6-phosphate hydrolase -
  DV527_RS04360 (DV527_04370) - 912306..913274 (+) 969 WP_002482780.1 carbohydrate kinase -
  DV527_RS04365 (DV527_04375) agrA 913351..914067 (-) 717 WP_002482781.1 quorum-sensing response regulator AgrA Regulator
  DV527_RS04370 (DV527_04380) - 914080..915375 (-) 1296 WP_041079873.1 quorum-sensing sensor histidine kinase AgrC -
  DV527_RS04375 (DV527_04385) - 915401..915562 (-) 162 WP_002482783.1 cyclic lactone autoinducer peptide AgrD -
  DV527_RS04380 (DV527_04390) - 915565..916134 (-) 570 WP_075340051.1 accessory gene regulator AgrB -
  DV527_RS04385 (DV527_04395) - 916894..917679 (-) 786 WP_011302730.1 carbon-nitrogen family hydrolase -
  DV527_RS04390 (DV527_04400) - 917850..918479 (-) 630 WP_069821659.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27954.74 Da        Isoelectric Point: 5.0875

>NTDB_id=304001 DV527_RS04365 WP_002482781.1 913351..914067(-) (agrA) [Staphylococcus saprophyticus strain 1A]
MKIFICEDDERQREHMVSIINNYIMIEEKPMEIEVATADPYDILERSKNLNDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRIIDCLETSESRLKLLSKESSVETIELKRGSNSIYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELDQLDERFFRCHNSFVVNRHNIDSIDSKSRVVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=304001 DV527_RS04365 WP_002482781.1 913351..914067(-) (agrA) [Staphylococcus saprophyticus strain 1A]
GTGAAAATATTCATTTGTGAAGATGATGAAAGACAACGTGAGCACATGGTTTCTATTATTAATAACTACATCATGATTGA
AGAAAAGCCAATGGAAATCGAAGTTGCCACTGCTGATCCTTATGACATCTTAGAACGCTCTAAGAACCTCAATGATATTG
GGTGTTATTTTTTAGATATTCAGCTTGAAGCTGATATTAATGGTATCAAACTTGCTAGTGAGATTCGTAAACATGATCCT
GTAGGTAATATCATCTTTGTTACAAGTCACAGTGAGTTAACTTACCTAACATTTGTCTATAAGGTAGCCGCGATGGATTT
CATTTTTAAAGATGATCCAGATGAATTAAAATCAAGAATTATTGACTGTCTTGAAACTTCAGAATCAAGATTGAAGCTTC
TTTCAAAAGAAAGTAGTGTTGAAACAATTGAATTAAAACGTGGAAGTAATTCGATTTATGTCCAATATGATGATGTTATG
TTCTTTGAATCATCTACTAAATCGCATCGATTGATTGCACATCTTGATAATCGTCAAATTGAGTTTTATGGCAATTTAAA
AGAATTAGATCAACTTGATGAGCGATTTTTCAGATGTCATAATAGCTTTGTCGTCAATAGACACAATATAGATTCTATTG
ACTCTAAGTCACGTGTTGTCTATTTTAAAAATAATGAACATTGCTATGCATCTGTTAGAAATGTCAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380HJP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

85.714

100

0.857

Multiple sequence alignment