Detailed information NTG0303993

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: U14A_RS14875
• Genome accession: NZ_CP035516
• Coordinates: 2967121..2968113 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain U14A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2962121..2973113

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U14A_RS14855 (U14A_02856)	ygbM	2962759..2963535 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
U14A_RS14860 (U14A_02857)	ygbN	2963624..2964988 (+)	1365	WP_000104433.1	GntP family transporter	-
U14A_RS14865 (U14A_02858)	-	2965131..2966174 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
U14A_RS14870 (U14A_02859)	-	2966399..2966950 (+)	552	WP_001179444.1	flavodoxin family protein	-
U14A_RS14875 (U14A_02860)	rpoS	2967121..2968113 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
U14A_RS14880 (U14A_02861)	nlpD	2968176..2969270 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
U14A_RS14885 (U14A_02862)	pcm	2969455..2970081 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
U14A_RS14890 (U14A_02863)	surE	2970075..2970836 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
U14A_RS14895 (U14A_02864)	truD	2970817..2971866 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
U14A_RS14900 (U14A_02865)	ispF	2971863..2972342 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
U14A_RS14905 (U14A_02866)	ispD	2972342..2973052 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=303993 U14A_RS14875 WP_000081550.1 2967121..2968113(-) (rpoS) [Escherichia coli strain U14A]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=303993 U14A_RS14875 WP_000081550.1 2967121..2968113(-) (rpoS) [Escherichia coli strain U14A]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715