Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DVK85_RS06020 Genome accession   NZ_CP031188
Coordinates   1315498..1316862 (+) Length   454 a.a.
NCBI ID   WP_114677576.1    Uniprot ID   A0A345HB57
Organism   Flavobacterium arcticum strain SM1502     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1310498..1321862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVK85_RS05995 (DVK85_05995) - 1311209..1312015 (-) 807 WP_114677571.1 glycogen/starch synthase -
  DVK85_RS06000 (DVK85_06000) panC 1312122..1312967 (+) 846 WP_114677572.1 pantoate--beta-alanine ligase -
  DVK85_RS06005 (DVK85_06005) panD 1312981..1313331 (+) 351 WP_114677573.1 aspartate 1-decarboxylase -
  DVK85_RS06010 (DVK85_06010) - 1313339..1314301 (+) 963 WP_114677574.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  DVK85_RS06015 (DVK85_06015) - 1314343..1315491 (+) 1149 WP_114677575.1 alpha/beta hydrolase -
  DVK85_RS06020 (DVK85_06020) radA 1315498..1316862 (+) 1365 WP_114677576.1 DNA repair protein RadA Machinery gene
  DVK85_RS06025 (DVK85_06025) - 1316880..1318871 (+) 1992 WP_114677577.1 transglycosylase domain-containing protein -
  DVK85_RS06030 (DVK85_06030) - 1318937..1320565 (+) 1629 WP_114677578.1 DUF4139 domain-containing protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49981.49 Da        Isoelectric Point: 6.0357

>NTDB_id=303961 DVK85_RS06020 WP_114677576.1 1315498..1316862(+) (radA) [Flavobacterium arcticum strain SM1502]
MAKVKTSFFCQNCGTQYSKWQGQCNACKEWNTIVEEVIQKEEKPVWRATTSPEVKKAARPLKIKEIDATSEQRLDTGDAE
LNRVLGGGIVPGSLTLLGGEPGIGKSTLLLQISLKLPYRTLYVSGEESQKQIKMRAERITPDADNCFILTETKTQNIFRQ
IEAIDPEVVIIDSIQTLHTDYIESAAGSISQIRETTAELIKFAKESNVPVILIGHITKDGSIAGPKILEHMVDTVLQFEG
DRNHVYRILRSLKNRFGSTAELGIYEMLGSGLREVTNPSEILISHKEEELSGTAIATTMEGMRPLMIEVQALVSSAVYGT
PQRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNITGGINVDDPAIDLAVVAAILSSNEDIPVNKDYCFAGEIGLSGE
VRPVNRVEQRILEAEKLGFSTIFVSKYNKISLKDTLIQIKLVAKIEDVAGHLFG

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=303961 DVK85_RS06020 WP_114677576.1 1315498..1316862(+) (radA) [Flavobacterium arcticum strain SM1502]
ATGGCTAAAGTAAAAACGTCTTTCTTTTGTCAAAACTGTGGTACACAATATTCAAAATGGCAAGGACAATGTAATGCTTG
CAAGGAATGGAACACCATAGTTGAGGAAGTAATACAAAAGGAAGAAAAACCTGTGTGGAGAGCAACTACATCTCCCGAAG
TAAAAAAAGCAGCACGACCTTTAAAAATTAAAGAAATAGATGCTACCAGCGAGCAACGTCTTGATACTGGAGATGCTGAG
CTTAACCGTGTGCTTGGTGGCGGTATAGTGCCTGGTTCTTTAACTTTACTTGGCGGAGAACCCGGTATAGGTAAAAGTAC
ATTGTTATTGCAAATATCTTTAAAGTTACCTTATCGTACGTTATATGTATCAGGAGAGGAAAGCCAGAAGCAAATAAAAA
TGCGTGCCGAAAGGATAACGCCTGATGCTGACAACTGCTTTATCCTTACCGAAACCAAAACCCAAAATATATTTAGGCAG
ATAGAGGCGATAGACCCCGAGGTGGTTATTATCGACTCGATACAAACGTTGCATACTGATTATATAGAATCAGCAGCAGG
AAGTATTTCGCAAATTAGAGAAACGACAGCCGAGTTGATAAAATTTGCCAAAGAAAGTAATGTACCCGTTATACTTATAG
GTCATATTACGAAAGACGGTAGCATAGCAGGACCCAAAATACTAGAGCACATGGTAGATACCGTGTTACAGTTTGAGGGA
GACCGTAACCATGTATATCGTATACTTCGTTCACTAAAAAACCGATTTGGCTCGACTGCCGAACTGGGTATTTATGAAAT
GCTGGGCAGCGGACTTCGTGAGGTAACCAATCCATCAGAGATATTAATATCACACAAAGAGGAGGAACTTAGCGGTACAG
CTATAGCCACCACTATGGAGGGTATGCGACCGCTAATGATAGAAGTACAGGCTTTGGTAAGCTCAGCGGTATATGGTACA
CCACAGCGTAGTACTACAGGCTATAATGCCAAACGCCTGAACATGATACTTGCTGTGTTAGAAAAACGTGCAGGTTTTAG
GCTAGGAGCAAAAGACGTTTTCCTTAATATTACGGGAGGTATTAATGTAGATGATCCTGCTATAGATCTGGCTGTAGTTG
CTGCAATATTATCGTCTAACGAGGATATACCTGTAAATAAAGATTATTGTTTTGCAGGCGAAATAGGTCTTTCGGGTGAG
GTGCGTCCCGTAAACCGAGTAGAACAACGCATACTAGAAGCCGAGAAATTAGGCTTCTCTACTATATTTGTTTCTAAGTA
CAACAAGATATCATTAAAAGATACCCTTATCCAAATTAAACTCGTAGCAAAAATAGAAGATGTTGCGGGGCATCTTTTCG
GTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(334-428)

AAA domain (AAA_25)

(60-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345HB57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

49.453

100

0.498
  radA Streptococcus pneumoniae D39

49.453

100

0.498
  radA Streptococcus pneumoniae R6

49.453

100

0.498
  radA Streptococcus pneumoniae TIGR4

49.453

100

0.498
  radA Streptococcus mitis SK321

49.123

100

0.493
  radA Streptococcus mitis NCTC 12261

49.123

100

0.493
  radA Bacillus subtilis subsp. subtilis str. 168

50.348

94.934

0.478

Multiple sequence alignment