Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EQO00_RS23990 Genome accession   NZ_CP035498
Coordinates   4825155..4825631 (+) Length   158 a.a.
NCBI ID   WP_001298074.1    Uniprot ID   -
Organism   Escherichia coli strain 04-00955     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4820155..4830631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQO00_RS23960 (EQO00_24005) - 4820825..4821709 (+) 885 WP_001116801.1 YfjP family GTPase -
  EQO00_RS23965 (EQO00_24010) - 4821912..4822592 (+) 681 WP_001282919.1 WYL domain-containing protein -
  EQO00_RS23970 (EQO00_24015) - 4822740..4823417 (+) 678 WP_001097301.1 hypothetical protein -
  EQO00_RS23975 (EQO00_24020) - 4823423..4823656 (+) 234 WP_001278283.1 DUF905 family protein -
  EQO00_RS23980 (EQO00_24025) - 4823746..4824564 (+) 819 WP_001175160.1 DUF932 domain-containing protein -
  EQO00_RS23985 (EQO00_24030) - 4824655..4825140 (+) 486 WP_000213697.1 antirestriction protein -
  EQO00_RS23990 (EQO00_24035) radC 4825155..4825631 (+) 477 WP_001298074.1 RadC family protein Machinery gene
  EQO00_RS23995 (EQO00_24040) - 4825718..4825939 (+) 222 WP_000692350.1 DUF987 domain-containing protein -
  EQO00_RS24000 (EQO00_24045) - 4826019..4826387 (+) 369 WP_001285575.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EQO00_RS24005 (EQO00_24050) - 4826477..4826851 (+) 375 WP_001468432.1 TA system toxin CbtA family protein -
  EQO00_RS24010 (EQO00_24055) - 4826848..4827336 (+) 489 WP_000777545.1 DUF5983 family protein -
  EQO00_RS24015 (EQO00_24060) - 4827348..4827545 (+) 198 WP_000839281.1 DUF957 domain-containing protein -
  EQO00_RS24020 (EQO00_24065) - 4827642..4828211 (+) 570 WP_001290252.1 DUF4942 domain-containing protein -
  EQO00_RS27300 (EQO00_24070) - 4828589..4828700 (+) 112 Protein_4655 integrase -
  EQO00_RS24030 (EQO00_24075) cadC 4828960..4830498 (+) 1539 WP_001187191.1 lysine decarboxylation/transport transcriptional activator CadC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17670.28 Da        Isoelectric Point: 7.2519

>NTDB_id=303934 EQO00_RS23990 WP_001298074.1 4825155..4825631(+) (radC) [Escherichia coli strain 04-00955]
MQQISFLPGEMTPGERSHILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=303934 EQO00_RS23990 WP_001298074.1 4825155..4825631(+) (radC) [Escherichia coli strain 04-00955]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCACATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399