Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EQO00_RS09955 Genome accession   NZ_CP035498
Coordinates   2077227..2077703 (-) Length   158 a.a.
NCBI ID   WP_001313574.1    Uniprot ID   -
Organism   Escherichia coli strain 04-00955     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2072227..2082703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQO00_RS09905 (EQO00_09940) sbmC 2072719..2073192 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  EQO00_RS09910 (EQO00_09945) yeeA 2073390..2074448 (+) 1059 WP_001200890.1 FUSC family protein -
  EQO00_RS09915 (EQO00_09950) tmaR 2074620..2074949 (+) 330 WP_000450409.1 DUF496 family protein -
  EQO00_RS27230 (EQO00_09955) - 2075050..2075232 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  EQO00_RS26890 - 2075352..2075432 (+) 81 WP_023441679.1 hypothetical protein -
  EQO00_RS09930 (EQO00_09965) - 2075721..2075801 (-) 81 Protein_1941 hypothetical protein -
  EQO00_RS09935 (EQO00_09970) yeeW 2075847..2076041 (-) 195 WP_000988601.1 DUF5983 family protein -
  EQO00_RS09940 (EQO00_09975) cbtA 2076038..2076412 (-) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  EQO00_RS09945 (EQO00_09980) cbeA 2076501..2076869 (-) 369 WP_001285586.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  EQO00_RS09950 (EQO00_09985) yeeT 2076943..2077164 (-) 222 WP_000692300.1 DUF987 domain-containing protein -
  EQO00_RS09955 (EQO00_09990) radC 2077227..2077703 (-) 477 WP_001313574.1 RadC family protein Machinery gene
  EQO00_RS09960 (EQO00_09995) - 2077719..2078192 (-) 474 WP_001313575.1 antirestriction protein -
  EQO00_RS09965 (EQO00_10000) - 2078455..2079276 (-) 822 WP_001234571.1 DUF932 domain-containing protein -
  EQO00_RS09975 (EQO00_10010) - 2079497..2079907 (-) 411 WP_000846704.1 hypothetical protein -
  EQO00_RS09980 (EQO00_10015) - 2079923..2080600 (-) 678 WP_001362823.1 hypothetical protein -
  EQO00_RS09985 (EQO00_10020) - 2080736..2081806 (-) 1071 WP_000102631.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17749.42 Da        Isoelectric Point: 7.6152

>NTDB_id=303905 EQO00_RS09955 WP_001313574.1 2077227..2077703(-) (radC) [Escherichia coli strain 04-00955]
MQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=303905 EQO00_RS09955 WP_001313574.1 2077227..2077703(-) (radC) [Escherichia coli strain 04-00955]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
TAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGGCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399