Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   EQO00_RS09895 Genome accession   NZ_CP035498
Coordinates   2069798..2071225 (-) Length   475 a.a.
NCBI ID   WP_000980557.1    Uniprot ID   -
Organism   Escherichia coli strain 04-00955     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2064798..2076225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQO00_RS09860 (EQO00_09895) hisL 2065382..2065432 (-) 51 WP_001364200.1 his operon leader peptide -
  EQO00_RS09865 (EQO00_09900) yefM 2065715..2065966 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  EQO00_RS09870 (EQO00_09905) yoeB 2065963..2066217 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  EQO00_RS09875 (EQO00_09910) yeeZ 2066300..2067124 (+) 825 WP_000754733.1 SDR family oxidoreductase -
  EQO00_RS09880 (EQO00_09915) yeeY 2067170..2068099 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  EQO00_RS09885 (EQO00_09920) yoeI 2068314..2068376 (+) 63 WP_010723108.1 membrane protein YoeI -
  EQO00_RS09890 (EQO00_09925) plaP 2068366..2069724 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  EQO00_RS09895 (EQO00_09930) sbcB 2069798..2071225 (-) 1428 WP_000980557.1 exodeoxyribonuclease I Machinery gene
  EQO00_RS09900 (EQO00_09935) dacD 2071434..2072600 (+) 1167 WP_001519880.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  EQO00_RS09905 (EQO00_09940) sbmC 2072719..2073192 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  EQO00_RS09910 (EQO00_09945) yeeA 2073390..2074448 (+) 1059 WP_001200890.1 FUSC family protein -
  EQO00_RS09915 (EQO00_09950) tmaR 2074620..2074949 (+) 330 WP_000450409.1 DUF496 family protein -
  EQO00_RS27230 (EQO00_09955) - 2075050..2075232 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  EQO00_RS26890 - 2075352..2075432 (+) 81 WP_023441679.1 hypothetical protein -
  EQO00_RS09930 (EQO00_09965) - 2075721..2075801 (-) 81 Protein_1941 hypothetical protein -
  EQO00_RS09935 (EQO00_09970) yeeW 2075847..2076041 (-) 195 WP_000988601.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54455.73 Da        Isoelectric Point: 5.4700

>NTDB_id=303904 EQO00_RS09895 WP_000980557.1 2069798..2071225(-) (sbcB) [Escherichia coli strain 04-00955]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=303904 EQO00_RS09895 WP_000980557.1 2069798..2071225(-) (sbcB) [Escherichia coli strain 04-00955]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583