Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EQO00_RS04085 Genome accession   NZ_CP035498
Coordinates   833662..834138 (-) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain 04-00955     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 828662..839138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQO00_RS04045 (EQO00_04050) - 828716..829699 (-) 984 WP_001298261.1 KpsF/GutQ family sugar-phosphate isomerase -
  EQO00_RS04050 (EQO00_04055) - 830510..830674 (-) 165 Protein_795 IS110 family transposase -
  EQO00_RS04055 (EQO00_04060) - 831023..831592 (-) 570 WP_096888569.1 DUF4942 domain-containing protein -
  EQO00_RS04060 (EQO00_04065) - 831689..831886 (-) 198 WP_000839281.1 DUF957 domain-containing protein -
  EQO00_RS04065 (EQO00_04070) - 831898..832386 (-) 489 WP_000777541.1 DUF5983 family protein -
  EQO00_RS04070 (EQO00_04075) - 832383..832757 (-) 375 WP_000854753.1 TA system toxin CbtA family protein -
  EQO00_RS04075 (EQO00_04080) cbeA 832847..833215 (-) 369 WP_001278232.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  EQO00_RS04080 (EQO00_04085) - 833378..833599 (-) 222 WP_000692316.1 DUF987 domain-containing protein -
  EQO00_RS04085 (EQO00_04090) radC 833662..834138 (-) 477 WP_001186726.1 RadC family protein Machinery gene
  EQO00_RS04090 (EQO00_04095) - 834154..834639 (-) 486 WP_044706283.1 antirestriction protein -
  EQO00_RS04095 (EQO00_04100) - 834694..835512 (-) 819 WP_001234620.1 DUF932 domain-containing protein -
  EQO00_RS04105 (EQO00_04110) - 835612..835845 (-) 234 WP_001119729.1 DUF905 family protein -
  EQO00_RS04110 (EQO00_04115) - 835924..836379 (-) 456 WP_000581504.1 IrmA family protein -
  EQO00_RS04115 (EQO00_04120) - 836455..838971 (-) 2517 WP_096888790.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=303887 EQO00_RS04085 WP_001186726.1 833662..834138(-) (radC) [Escherichia coli strain 04-00955]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=303887 EQO00_RS04085 WP_001186726.1 833662..834138(-) (radC) [Escherichia coli strain 04-00955]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392