Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   EQO00_RS04020 Genome accession   NZ_CP035498
Coordinates   821740..822987 (-) Length   415 a.a.
NCBI ID   WP_021521025.1    Uniprot ID   -
Organism   Escherichia coli strain 04-00955     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 816740..827987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQO00_RS04005 (EQO00_04010) galE 817230..818249 (+) 1020 WP_021521028.1 UDP-glucose 4-epimerase GalE -
  EQO00_RS04010 (EQO00_04015) - 818341..820623 (+) 2283 WP_021535434.1 hypothetical protein -
  EQO00_RS04015 (EQO00_04020) - 820620..821249 (+) 630 WP_021521026.1 CatB-related O-acetyltransferase -
  EQO00_RS04020 (EQO00_04025) kpsS 821740..822987 (-) 1248 WP_021521025.1 capsular biosynthesis protein Regulator
  EQO00_RS04025 (EQO00_04030) - 823022..825049 (-) 2028 WP_152659881.1 capsular polysaccharide biosynthesis protein -
  EQO00_RS04030 (EQO00_04035) kdsB 825046..825786 (-) 741 WP_000030747.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  EQO00_RS04035 (EQO00_04040) - 825796..827472 (-) 1677 WP_001305965.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 49413.11 Da        Isoelectric Point: 10.1281

>NTDB_id=303886 EQO00_RS04020 WP_021521025.1 821740..822987(-) (kpsS) [Escherichia coli strain 04-00955]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQAEFKPDMKLFKKFRGYLLVKTQVNGVYYGDVKKGLVWII
RTDFSYIKNNTIQSP

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=303886 EQO00_RS04020 WP_021521025.1 821740..822987(-) (kpsS) [Escherichia coli strain 04-00955]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTGCGAGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGTTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAACTATTACGCCATGCAAAAGCGGTGGTA
ACAATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTAACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGAGTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTTAAGACACAGGTTAATGGGGTTTATTATGGGGATGTAAAGAAAGGGTTAGTGTGGATTATA
AGAACAGATTTTTCTTACATCAAAAATAATACAATACAATCACCGTGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.898

94.217

0.376

Multiple sequence alignment