Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   DVH26_RS25355 Genome accession   NZ_CP031168
Coordinates   5756621..5756992 (-) Length   123 a.a.
NCBI ID   WP_239635482.1    Uniprot ID   -
Organism   Paenibacillus sp. H1-7     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 5751621..5761992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVH26_RS25340 - 5753890..5754043 (-) 154 Protein_5015 HNH endonuclease -
  DVH26_RS25345 (DVH26_25485) - 5754040..5754384 (-) 345 WP_239626754.1 hypothetical protein -
  DVH26_RS25350 (DVH26_25490) - 5755406..5756131 (+) 726 WP_239626756.1 DUF421 domain-containing protein -
  DVH26_RS25355 (DVH26_25495) nucA/comI 5756621..5756992 (-) 372 WP_239635482.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  DVH26_RS25360 (DVH26_25500) - 5757161..5758021 (-) 861 WP_239626758.1 class I SAM-dependent methyltransferase -
  DVH26_RS25365 (DVH26_25505) - 5758005..5758841 (-) 837 WP_239635483.1 XrtA system polysaccharide deacetylase -
  DVH26_RS25370 - 5759233..5759379 (+) 147 WP_239626761.1 hypothetical protein -
  DVH26_RS25375 - 5759507..5759665 (-) 159 WP_239626763.1 hypothetical protein -
  DVH26_RS25380 (DVH26_25510) - 5759855..5760079 (-) 225 WP_239626766.1 helix-turn-helix transcriptional regulator -
  DVH26_RS25385 (DVH26_25515) - 5760169..5760465 (-) 297 WP_239626768.1 hypothetical protein -
  DVH26_RS25390 (DVH26_25520) - 5760635..5761939 (-) 1305 WP_239626770.1 6-phospho-beta-glucosidase -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13367.98 Da        Isoelectric Point: 5.8811

>NTDB_id=303864 DVH26_RS25355 WP_239635482.1 5756621..5756992(-) (nucA/comI) [Paenibacillus sp. H1-7]
MYLNQDGLLPPDEDSAAAVTLTFPTDRYPETAQHIRNALQRGKSAICTIDRKGAEDNRKESLKGTPSKPNLDRDEFPMAM
CAEGGAGADIAYISPSDNRGAGSWISNQLEKYPNGTKVKIVVK

Nucleotide


Download         Length: 372 bp        

>NTDB_id=303864 DVH26_RS25355 WP_239635482.1 5756621..5756992(-) (nucA/comI) [Paenibacillus sp. H1-7]
ATGTATTTGAACCAGGATGGGCTATTACCCCCAGATGAAGATTCAGCGGCTGCAGTCACGTTGACGTTTCCAACCGATCG
TTATCCGGAAACGGCACAGCATATCCGGAATGCGCTGCAGCGAGGGAAATCTGCGATTTGTACCATAGACCGCAAAGGCG
CCGAAGACAACCGGAAGGAGTCGCTGAAAGGGACGCCGTCGAAGCCGAATCTGGATCGTGACGAGTTTCCGATGGCGATG
TGTGCTGAAGGCGGAGCCGGGGCGGATATTGCCTACATATCTCCTTCCGATAACCGTGGCGCCGGCTCGTGGATAAGCAA
CCAGCTGGAGAAGTATCCGAATGGGACCAAGGTGAAAATTGTCGTTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(26-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

60.577

84.553

0.512

Multiple sequence alignment