Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DVH26_RS02060 Genome accession   NZ_CP031168
Coordinates   437630..438997 (+) Length   455 a.a.
NCBI ID   WP_239630928.1    Uniprot ID   -
Organism   Paenibacillus sp. H1-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 432630..443997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVH26_RS02040 (DVH26_02025) - 432762..433223 (+) 462 WP_239630924.1 CtsR family transcriptional regulator -
  DVH26_RS02045 (DVH26_02030) - 433236..433754 (+) 519 WP_239630925.1 hypothetical protein -
  DVH26_RS02050 (DVH26_02035) - 433782..434843 (+) 1062 WP_239630926.1 protein arginine kinase -
  DVH26_RS02055 (DVH26_02040) clpC 434915..437359 (+) 2445 WP_239630927.1 ATP-dependent protease ATP-binding subunit ClpC -
  DVH26_RS02060 (DVH26_02045) radA 437630..438997 (+) 1368 WP_239630928.1 DNA repair protein RadA Machinery gene
  DVH26_RS02065 (DVH26_02050) disA 439143..440222 (+) 1080 WP_239630929.1 DNA integrity scanning diadenylate cyclase DisA -
  DVH26_RS02070 (DVH26_02055) pssA 440301..441035 (+) 735 WP_239630930.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  DVH26_RS02075 (DVH26_02060) - 441219..442313 (+) 1095 WP_239630931.1 PIN/TRAM domain-containing protein -
  DVH26_RS02080 (DVH26_02065) ispD 442393..443097 (+) 705 WP_239630932.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  DVH26_RS02085 (DVH26_02070) ispF 443094..443579 (+) 486 WP_239630933.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49491.92 Da        Isoelectric Point: 6.9454

>NTDB_id=303852 DVH26_RS02060 WP_239630928.1 437630..438997(+) (radA) [Paenibacillus sp. H1-7]
MAKQKTKFCCQECGYESPKWLGKCPGCQSWNTFVEEVETITKTQGISSSLLKTKEKPVSIIHIKSSEEQRIVTRNKELNR
VLGGGVVPGSLLLVGGDPGIGKSTLLLQTSHDLTLSGQKVLYVSGEESVRQTKLRADRLNASSEQLFVLCETNLELIEAA
IEEVQPDFVVIDSIQTVYHPGVQSAPGSVAQVRECTGHFMRVAKIKGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYFEG
ERHHSYRLLRAVKNRFGSTNEIGIFEMQENGLVEVNNPSELFLSERPLGVSGSTVVASMEGTRPVLVELQALVSSTNFPS
PRRMATGIDHNRLSLIIAVLEKRIGMFLQNQDAYVNVAGGVKLDEPAVDLAIAVSIASSLREQPTQPYDVVFGEVGLTGE
VRGVSRVDQRVKEAEKLGFRRVILPEKSLKGWTPPSGIEVIGVNTVAEALKAALG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=303852 DVH26_RS02060 WP_239630928.1 437630..438997(+) (radA) [Paenibacillus sp. H1-7]
ATGGCAAAGCAAAAGACGAAATTCTGCTGCCAGGAGTGCGGCTACGAGTCGCCCAAATGGCTTGGCAAATGCCCGGGATG
CCAATCCTGGAACACATTTGTAGAAGAAGTAGAAACCATCACGAAAACACAAGGTATTAGTTCTTCTTTATTGAAGACGA
AAGAAAAGCCTGTTTCTATCATACATATAAAAAGCAGTGAAGAGCAGCGTATCGTAACGCGAAACAAAGAACTGAACCGG
GTGCTCGGCGGTGGCGTAGTCCCAGGCTCACTGCTGCTGGTCGGGGGAGACCCCGGCATCGGCAAATCGACGCTGCTTCT
CCAGACATCACACGATCTGACCCTGTCCGGACAAAAGGTATTGTACGTATCGGGCGAGGAATCCGTGCGGCAAACGAAGC
TGCGTGCAGATCGTCTGAATGCCTCGTCGGAACAATTGTTCGTATTGTGCGAAACGAACCTGGAATTGATTGAAGCGGCG
ATCGAAGAGGTGCAGCCGGATTTTGTTGTCATCGATTCGATCCAGACGGTGTATCACCCGGGCGTTCAATCGGCTCCGGG
CAGCGTAGCGCAGGTTCGGGAATGTACCGGCCATTTTATGCGGGTCGCCAAGATTAAAGGTATTGCGACGGTACTCGTTG
GCCATGTTACTAAAGAAGGGGCTATTGCAGGCCCAAGATTGCTGGAGCATATGGTGGACTGCGTCCTTTATTTCGAAGGA
GAGCGGCATCACTCATACCGGCTGCTGCGAGCAGTCAAAAACCGCTTCGGTTCAACGAACGAAATCGGTATTTTCGAAAT
GCAGGAGAACGGCTTGGTGGAAGTGAACAATCCTTCCGAGTTGTTCTTGTCGGAGCGTCCATTAGGCGTCTCAGGATCGA
CGGTAGTGGCCAGCATGGAAGGGACACGGCCGGTGCTTGTCGAGCTGCAAGCGCTTGTTTCCTCCACGAACTTCCCTTCG
CCGCGACGAATGGCGACAGGTATAGACCATAACAGGCTTTCGTTAATTATAGCGGTGCTGGAGAAACGAATCGGCATGTT
TTTGCAAAATCAGGATGCGTATGTCAACGTAGCTGGCGGCGTCAAGCTCGATGAGCCTGCCGTTGACCTGGCGATTGCGG
TGAGCATTGCTTCCAGCTTAAGAGAACAGCCTACACAGCCTTACGATGTTGTGTTTGGGGAAGTAGGCCTGACAGGCGAG
GTACGGGGCGTATCCCGCGTGGATCAGCGGGTGAAGGAAGCGGAGAAGCTGGGCTTCCGGAGAGTCATTTTGCCGGAGAA
GAGCTTGAAGGGCTGGACCCCTCCGAGCGGTATCGAGGTTATTGGCGTAAATACGGTGGCTGAAGCATTGAAGGCTGCCT
TAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-220)

Subunit ChlI of Mg-chelatase (ChlI)

(344-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.958

100

0.673
  radA Streptococcus mitis SK321

59.645

99.121

0.591
  radA Streptococcus mitis NCTC 12261

59.424

99.121

0.589
  radA Streptococcus pneumoniae Rx1

59.424

99.121

0.589
  radA Streptococcus pneumoniae D39

59.424

99.121

0.589
  radA Streptococcus pneumoniae R6

59.424

99.121

0.589
  radA Streptococcus pneumoniae TIGR4

59.424

99.121

0.589

Multiple sequence alignment